Processes controlling abundance of dominant copepod
species on Georges Bank:
Local dynamics and large-scale
forcing
PIs: Cabell
Davis (WHOI), Robert Beardsley (WHOI), Changsheng Chen
(UMassD),
Rubao Ji (WHOI), Edward Durbin (URI), David Townsend (UMaine),
Jeffrey Runge (UNH), Charles Flagg (SUNY), Richard
Limeburner (WHOI)
Project Summary
A fundamental goal of
Biological Oceanography is to understand how underlying biological-physical
interactions determine abundance of marine organisms. For animal populations, it is well known
that factors controlling survival during early life stages (i.e., recruitment)
are strong determinants of adult population size, but understanding these
processes has been difficult due to model and data limitations. Recent advances in numerical
modeling, together with new 3D data sets, provide a unique opportunity to study
in detail biological-physical processes controlling zooplankton population
size. We propose to use an existing
state-of-the-art biological/physical numerical model (FVCOM) together with the
recently-processed large 3D data set from the Georges Bank GLOBEC program to
conduct idealized and realistic numerical experiments that explore the detailed
mechanisms controlling seasonal evolution of spatial patterns in dominant
zooplankton species on
1.
Background
The GLOBEC
approach — Understanding complex
marine ecosystems requires use of simplifying assumptions, which historically
has involved trophodynamic analysis of energy or mass flow by measurement and
modeling (Lindeman, 1942; Teal, 1962; Odum, 1957; Steele, 1974). In regions of high diversity such as the
oligotrophic ocean this approach remains the only feasible method of analysis
(e.g., Sarmiento et al., 1993). As
an alternative in low diversity regions, it is possible to model the population
dynamics of a few dominant species to understand processes controlling their
abundance and to obtain information about system level functioning (e.g.,
Georges Bank
GLOBEC: dominant zooplankton species
— Georges Bank was chosen as the first
GLOBEC study site due to its sensitivity to climate change, definable
populations, importance as a fishing ground, and significant historical database
(GLOBEC, 1992). The goal of this
program is to understand the biological and physical processes controlling
abundance of cod and haddock larvae and their dominant prey species. In the program implementation plan we
emphasized the copepods Calanus
finmarchicus and Pseudocalanus
spp. as target species, since these are dominant prey
items for larval cod and haddock.
Subsequent studies have found that small copepods (Pseudocalanus spp., Oithona
similis, Centropages spp., Temora longicornis)
are dominant prey items for cod and haddock larvae on Georges and Western Banks
(Lough and Mountain, 1996; Lough et al, 1996; McLaren and Avendano. 1995; McLaren et al., 1997). This contrasts sharply with the
situation in the eastern
1.1. The
Local dynamics
— Georges Bank (GB), the Gulf
of Maine (GOM), and Scotian Shelf (SS) are part of a single regional coastal
current system, driven in large part by upstream mass and buoyancy forcing (Fig.
1). The bank itself is a quasi-flow-through system, with water from offshore and
upstream sources arriving on the bank, being modified locally by surface forcing
and tidal mixing before moving off-bank to the Mid-Atlantic Bight or
re-circulated northward along the Great South Channel.
The strongest currents over
the bank are of tidal origin, and turbulent mixing associated with the tidal
bottom boundary layer is most intense over the shallow cap of the bank,
effectively eliminating local vertical temperature and salinity stratification
throughout the year. As seasonal
stratification increases on the flanks of the bank, the tidal mixing front forms
with associated secondary flow. The clockwise around-bank residual flow
increases with seasonal stratification, becoming partially closed from June
through
|
|
Figure 1.
Circulation: 1 flow across GSC into the north flank jet, 2
tidal-pumping of deep water onto GB, 3
wind-driven near-surface flow, 4
small-scale cross-frontal processes, 5
SS cross-over |
|
|
Figure 2. Schematic of the western
(Fratantoni and Pickart,
2005) |
September until fall storms
and surface cooling destroy the local stratification. Surface heating drives the development
of the seasonal thermocline.
Salinity on the bank is controlled by advective and mixing processes
along the northern and southern flanks.
On the southern flank salinity is influenced by on-bank intrusions of
saline shelf-break frontal water and very saline warm-core ring water (Fig.
1). Along the northern flank
salinity is controlled by advection from the western Gulf across the northern
Great South Channel (Fig. 1, 1), tidally-driven near-bottom residual flow (the
“tidal pump”, Fig. 1, 2), wind-driven near-surface flow (Fig. 1, 3),
small-scale cross-frontal processes (Fig. 1, 4), and
intermittent cross-over of low salinity SS surface water (Fig. 1, 5).
The tidal pump in particular provides a strong mechanism for bringing
deep water from
|
|
Figure 3. Schematic showing the strong westward
penetration of LSW and northward position of the |
Large-scale
forcing — Water enters the GOM via two
primary paths: (1) the flow of
relatively fresh water above 100m from the SS and (2) warmer, more saline Slope
Water (SW) at depths greater than 100m through the Northeast Channel (NEC). The
primary source of SS water is the West Greenland/Labrador Current system, with
additional input from the St. Lawrence system (Fig. 2). As the Labrador Current
flows around the Grand Banks, the large shoaling in shelf-break depth from ~300m
in the north to ~100m to the southwest helps force the deeper Labrador Current
water to flow along the upper slope, thus forming Labrador Slope Water (LSW),
which flows west into the Laurentian Channel and along
the Scotian upper slope. The westward extent of LSW depends on its source
strength, thought to depend on basin-scale forcing (NAO) (Fig 3), and degree of
mixing with ambient Warm Slope Water (WSW) of
|
Fig. 4. GB salinity anomaly (Mountain,
2005) |
|
Fig. 5. Percent LSW in bottom water
(150- 200 m) in 1998. (Drinkwater et al,
2003) |
Data from the 1995-1999 GB
GLOBEC field study provide an excellent example of the flow-through nature of
the GB/GOM system and its linkage to larger basin-scale forcing. The salinity on
GB exhibited two significant freshening events between early 1996 to early 1997
and between late 1997 through 1998, with a net drop of ~1 psu (Fig. 4). These two events also were observed in surface
(0-30m) GOM waters, suggesting significant increases in freshwater influx from
the SS (Smith et al., 2001). In the
NEC, WSW was replaced by cooler, fresher LSW in January 1998 as the leading edge
of LSW flow extended west due to an increase in the Labrador Current associated
with a low NAO. As LSW entered the GOM during early 1998, it mixed with resident
GOM water (Fig 5). By early 1999,
WSW was again flowing into the GOM through the NEC. Since the tidal pump mechanism can carry
deep water up on the northern flank of GB, advection of LSW in Georges Basin
onto the bank can occur on relative short time scales (>=1 month), suggesting
that part of the freshening on GB observed during 1998 was due to the influx of LSW into the GOM. Clearly, variations in the primary
upstream sources (the SS Water, the mix of WSW versus LSW) linked to basin-scale
forcing strongly control the water properties (including heat, salt and
nutrients) through the GOM and onto GB.
|
Fig. 5a.
Scenario of nutrient input onto GB from the NEC (Townsend et al.,
2004). |
1.2. Connection
between NAO and plankton productivity on GB
NAO-dependent intrusions of LSW and WSW through the NEC
greatly influence the nutrient (N, Si) input into the
GOM. It is
believed that the tidal pumping mechanism along the northern edge of the bank
can quickly transport nutrients from
1.3. Characteristics of GB
zooplankton
GB
zooplankton is dominated by Calanus
finmarchicus, Pseudocalanus spp., Oithona similis, Centropages spp., and Temora longicornis,
and Paracalanus parvus (Bigelow,
1926; Davis, 1984, 1987b; Sherman et al, 1987; Durbin et al., 2003; Durbin
and Casas, submitted). Each
species exhibits a characteristic
life cycle and seasonal/spatial pattern in the GB/GOM region. Calanus finmarchicus and Pseudocalanus spp. are cold-water species that avoid the warm surface
layer (>10-12oC) during summer and fall and produce large spring
populations. Centropages spp, Temora, and Paracalanus are warm water species and
are most abundant during late summer and fall. Oithona is plentiful throughout the
GB/GOM region year round.
|
Fig. 6. Calanus finmarchicus abundance (log10(#/10m2) in the GB/GOM, mean 1977-1987, (MARMAP data redrawn from Meise and OReilly, 1998). |
Calanus
finmarchicus— This species
spends the warmer months in a state of diapause as stage CV in cooler waters
(5-7 oC) at depth in the GOM (Fig. 6). During late December, it
emerges from diapause (mechanism unknown), swims to the surface and molts to
adult. Subsequent egg production
depends on availability of phytoplankton (Durbin et al., 2003), with the first
generation born in late December-early January (Durbin et al., 1997). Generation time is ~2 months at the cold
winter/spring temperatures (~5 oC), so G1 adults appear in March, and
there is time for a total of 3 generations by the end of its growing season in
July. Overwintering females produce eggs for a
prolonged period, smearing out cohorts
(Durbin and Casas, submitted). This
annual cycle in the GB/GOM appears stable, having
persisted for many decades (Bigelow, 1926; Clarke et al, 1946; Meise-Munns et al., 1991), but the extent to which this
population is self-sustaining is unknown.
|
|
Fig. 7. Calanus finmarchicus abundance in
the |
Calanus finmarchicus is an open ocean species, occurring throughout the
northern
It
may well be that the resident diapausing GOM population is sufficient to produce
the large spring GOM/GB population.
At the end of the growing season, downward migrating diapausing CVs
cannot reach their normal open ocean depths of 500-2000m, and they become
trapped in the GOM basins. A
similar effect has been observed on the SS basins (Sameoto and Herman, 1990) and for C. pacificus
in the
|
Fig. 8. GLOBEC monthly mean Calanus abundance
on GB, showing abundance
“hole” |
|
Fig. 9.
Pseudocalanus abundance
in the GB/GOM. MARMAP bi-monthly means 1977-1987 (from McGillicuddy et al.,
1998). |
Although C.
finmarchicus may be able to sustain itself in the GB/GOM system, it does not
maintain itself on GB, since the bulk of the population disappears from the bank
during the off-season (Fig. 6) and even during the growing season its abundance
appears to be driven by GOM concentrations, with a well-defined “hole” in
abundance in the center of the bank (Fig. 8, Durbin and Casas, submitted).
This hole results from a combination of advection around the bank of the
large GOM population and possibly high predation over the crest. A huge literature exists for C. finmarchicus egg production,
development and growth as a function of food and temperature including several
studies done as part of the GLOBEC GB process work (Campbell and Head, 2000;
Campbell et al., 2001a,b; Runge et al. submitted). Such data can be incorporated into the
population model for this species and used together with the large field data
base to conduct targeted forward modeling to examine biological/physical
processes controlling observed patterns.
Pseudocalanus spp.— Like Calanus, the growth season for Pseudocalanus is winter/spring (Fig. 9,
10). Its abundance is higher in
shallower areas (<100m) and is highest in the crest region of the bank in
June. Pseudocalanus does not
overwinter in the GOM as does Calanus and is
not normally present in the central Gulf during winter. This genus is an egg carrier and
consequently has lower egg production and egg mortality rates (Corkett and McLaren, 1978; Ohman
et al., 2002). Pseudocalanus in the GB/GOM
|
Fig. 10. GLOBEC data for Pseudocalanus
|
|
Fig. 11. A) Temora, B) Centropages hamatus C) Centropages typicus, D) Oithona similis. Mean monthly GLOBEC data for 1995-1999, A,B,D May;
C January; log10(#/m3+1) |
region
comprises two species: P. newmani
and P. moultoni (Frost, 1989;
McLaren et al., 1989a; Bucklin et al., 1998, 2001; McGillicuddy and Bucklin, 2002). P. moultoni appears to be a colder water
species and more abundant during winter/spring, while P. newmani is more plentiful during
spring/summer (McLaren et al., 1989a,b). P. moultoni is a coastal species and P. newmani an offshore one (Frost,
1989). Thus P. moultoni may be carried onto the bank
from western GOM coastal waters (e.g.,
Other Dominant
Copepod Species — Each dominant copepod species on GB has its own
characteristic temporal-spatial patterns and life histories (e.g.,
|
Fig. 12.
Abundance trends in GB copepod, GLOBEC
1995-1999. |
Abundance
trends during the GLOBEC years
— Abundance of the dominant copepod
species, except Calanus, increased
significantly during the five-year GLOBEC GB field program (Fig. 12.). While this trend may reflect a change
toward smaller species, indicative of a warming trend, no concomitant increase
in temperature was observed.
These
changes were negatively correlated with salinity (Durbin and Casas, submitted.). High abundances in 1999 appear to be
related to a phytoplankton bloom that took place during winter in the
central
GOM, leading to high reproductive rates and abundances (Durbin et al 2003). The
elevated abundances may have been advected onto GB. It is possible that low surface salinity
during winter increased stability of the water column and led to the bloom. A
negative correlation between salinity and chlorophyll on GB also was found at
this time (Durbin and Casas, submitted), the reason
for which is unknown. The proposed
modeling work will examine the potential causes of the zooplankton increase and its relationship
to large-scale forcing and climate change.
1.4. Available Data
Sets
GLOBEC
GB — The GLOBEC GB field program
was conducted from 1995-1999 and included a combination of monthly broadscale
and process-oriented cruises (GLOBEC, 1992; Wiebe et al, 2002). Broadscale cruises provided 3D maps of
the plankton species based on net tows (1-m2 MOCNESS, Wiebe et al.,
1985) at a set of 41 standard stations covering the bank and adjacent waters,
and plankton pump sampling (Durbin et al 1997, 2000) at ~18 of the standard
stations. CTD bottle casts were made at all stations. MOCNESS (0.15 mm mesh nets) zooplankton
samples were collected from 0-15, 15-40 m, and 40-100 m or the bottom (if
shallower than 100 m) and 100 m to the bottom or 450 m (if >100 m). Pump (0.035-mm nets) samples were
collected over the same depth ranges as the MOCNESS in the upper water column
but the maximum depth it was deployed to was 70-100 m depending on wind and
tides, or to the bottom on shallower parts of the bank. For complete description of collection
and processing methods see (Durbin et al. 1997; 2000). Samples were sorted, and processed data
now are available for all life stages of Calanus finmarchicus and
Pseudocalanus spp. (N1-N6, C1-Adult). For
other copepod species life stages were sorted as adult males and females, copepodids, and nauplii. These
data are stored in an Oracle database together with all of the CTD and
chlorophyll data (http://globec.gso.uri.edu/). The complete GLOBEC GB data set for
broadscale zooplankton includes >3500 net samples (41 stations, 3 depths, 30
cruises), plus >1500 pump samples (18 stations, 3 depths, 30 cruises). In addition, vertically stratified data
from several other cruises have been collected in deeper regions of the
GOM.
Other Data
Sets — Data from the bimonthly cruises of the
MARMAP program 1977-87 and its follow-on program, ECOMON (1992-present), include
shelf-wide distributions of hydrography and zooplankton (0.333mm bongos). The complete data set is available to us
via an NMFS Oracle database (D. Mountain, pers.
comm.) Although the zooplankton
data are from integrated hauls, these data cover a broader area than the GLOBEC
GB data, and, together with GLOBEC vertical data from deeper GOM, will allow us
to approximate 3D spatial patterns of each species throughout the GOM
region. Further data from the GOM
CPR transect, transatlantic CPR,
1.5. Previous
modeling
Several previous biological/physical models of the
GB/GOM region have been developed.
1.6. Combining
existing models and data
Over
the past decade, the GLOBEC GB program has acquired and processed an exceptional
5-year 3D data set of plankton and physical variables, while at the same time
developing a high-resolution state-of-the-art prognostic 3D biological/physical
model of this region (FVCOM). Data
processing and model development recently have reached the point where they can
be effectively combined. By the
start of the proposed study, the FVCOM model will have been ported to a
massively-parallel supercomputer. We now have the unique opportunity to use the
data and model together to study the detailed mechanisms controlling zooplankton
abundance patterns on GB, explicitly including boundary forcing determined by
basin-scale dynamics.
We
have assembled a team of PIs who are leading experts on the plankton and
physical dynamics of this area.
Beardsley and Flagg are physical oceanographers with a long background in
this region. Chen is a physical oceanographer and developer of the FVCOM model.
Durbin is the scientist in charge of the broadscale data acquisition and
processing. Runge is an expert in
copepod biology specializing in Calanus fertility and population
dynamics. Townsend is the lead
scientist studying nutrient-plankton production in the GB/GOM region.
2.
Proposed Research
2.1. Hypotheses
Working Hypothesis – The seasonal evolution of characteristic mean spatial abundance
patterns of each dominant copepod species on GB is predictable from the
interaction between its characteristic life-history traits and
physical transport. These
life-history traits include egg production, development, and growth rates
(temperature/food dependent) as well as other traits such as vertical migration
and diapause. Both the long-term,
multi-year, mean and year-to-year variations in seasonal-spatial patterns are
predictable by these interactions.
Within this working hypothesis, we will address three specific null
hypotheses:
H10: The
abundance of copepod species on the bank is controlled by food availability
(bottom-up control). Here we will
examine the scenario that GB productivity, and thus food availability for the
dominant copepod species, is controlled by nutrient input into the GOM through
the NEC, which is determined by the intrusions of Labrador Slope Water versus
Warm Slope Water. Alternative
hypotheses include: 1) predatory
control of copepod seasonal cycles (top-down control), 2) a combination of
food-limitation and predation (time-space dependent), and 3) purely physical
control by direct effects of temperature on vital rates or advection. In 3), we will examine causes of the
observed increase in warm-water copepod species during the GLOBEC years
(1995-1999).
H20:
Copepod populations on GB and/or the GOM region are not
self-sustaining. We will examine
the need for immigration from different sources to maintain the copepod
populations over multiple years. Key source regions will be examined
including the SS and SW. For
self-sustainability on GB itself, we will examine potential sources from the
coastal regions (e.g.,
H30:
Catastrophic global warming (e.g., total polar ice melt), parameterized
as a lack of Labrador Sea water at the NEC, causes a regime shift on GB from
cold-water copepod species to warm-water ones.
2.2. Objectives
The
overall goal of the proposed study is to understand the underlying
biological-physical mechanisms controlling the seasonal development of spatial
patterns of dominant copepod species on GB. Our specific objectives are: 1) to
examine how local-dynamics and external forcing control the abundance of these
species on GB, 2) to determine the degree to which top-down versus bottom up
processes control the dominant copepod species on GB, and 3) to use existing
state-of-the-art 3D physical/biological numerical models together with existing
high-quality 3D data sets from the GLOBEC GB field program (and other historical
data sets), to conduct targeted numerical experiments that explore the
likelihood of the hypotheses listed above.
2.3. Methods
2.3.1.
The Integrated
Model System
The UMASSD-WHOI research
team has developed an integrated model system for the GOM/GB region (Fig. 13).
The major components of this system include: (1) the modified fifth-generation
community mesoscale atmospheric model (MM5), (2) the unstructured grid
MM5— The current version of the meteorological model utilizes
the fifth-generation mesoscale regional weather model (MM5) developed by
NCAR/Penn State (Dudhia et al., 2003; Grell et al., 1994) for community use. MM5 uses NCAR/NCEP or
ETA weather model fields as initial and boundary conditions with two-way nesting
capability, and can provide continuous hindcasts and three-day forecasts. We
have used MM5 to construct the surface weather hindcast and forecast system for
fishery studies in the GOM/GB (Chen et al., 2004). This model (called GOM-MM5)
is configured with a regional domain (covering the
GOM-MM5 is presently in operational use, with 3-day
forecasts of the surface conditions, (including wind stress, heat flux, P-E)
over the GOM/GB region posted on the SMAST website (http://www.smast.umassd.edu/research_projects/GB/mm5/mm5_eta/)
for research, education, and public use. By this summer, we will complete the
hindcast of the surface forcing fields with mesoscale (10-km) resolution
covering the FVCOM domain for the 1995-1999 GLOBEC field period. This is the first calibrated mesoscale meteorological
database built in the GLOBEC GB Phase 4 program.
FVCOM—
FVCOM is a prognostic, unstructured
grid, finite-volume, free-surface, 3D primitive equation coastal ocean
circulation model (Chen et al., 2003; Chen et al. 2004a). In common with other
coastal models, FVCOM uses the modified Mellor and Yamada level 2.5 (MY-2.5) and
Smagorinsky turbulent closure schemes for vertical and
horizontal mixing, respectively (Mellor and Yamada, 1982; Galperin et al., 1988; Smagorinsky, 1963), and a sigma coordinate to follow bottom
topography. The General Ocean Turbulent Model (GOTM) developed by Burchard’s research group in
FVCOM has been validated through direct comparison with
analytical solutions for idealized cases (Chen et al., 2005b; Huang et al.,
2005a-c) and other models for application in estuaries (Chen et al., 2005d-e;
Huang et al., 2005d), inter-bays (Zhao et al., 2005) and the GOM/GB region (Chen
et al, 2003b; Chen et al., 2005c).
These studies show that different physical processes controlling currents
and stratification in the coastal ocean have inherent time and space scales that
must be carefully considered when determining model grid resolution for accurate
simulation. This is particularly important with freshwater discharge,
buoyancy-driven coastal plumes and currents, tidally-forced flows and upwelling,
and fronts in the GOM/GB region (Chen et al 2005a). For example, model dye experiments made
to simulate Houghton’s May/June 1999 dye dispersion observations on GB suggest
that the horizontal resolution needed to resolve the diffusive flux is 500 m
(Chen et al., 2005c). This
resolution is also required to have a convergence solution of the tidal-induced
residual current and buoyancy-induced current at the shelfbreak on GB (Chen et al., 2005b). These requirements will be used to refine
the final FVCOM grid used in the proposed work.
FVCOM has been used to hindcast currents and hydrography in the GOM/GB
region for 1995 and 1999 using GOM-MM5 surface forcing, 4D data assimilation of
5-day averaged satellite SST and available moored current data, and open
boundary conditions (Chen et al., 2003b).
The model tidal currents compare very well with available surface
elevation and current data, with overall uncertainties for the dominant M2
component of less than 3 cm in amplitude, 5° in phase, and 3 cm/s in the tidal
current major axis (Chen et al., 2005c).
The model subtidal currents and stratification
also compare well with existing in-situ measurements, capturing the seasonal
cycle in vertical stratification and increased around-bank circulation during
June-September. These two hindcasts
clearly illustrate significant short-term (daily to weekly) and long-term
(seasonal and interannual) variability in the subtidal currents on GB. For example, surface winds in March 1999
were stronger and more variable than in 1995, resulting in stronger monthly-mean
offbank near-surface flow in 1999 than in 1995 (Fig
15).
FVCOM
Biological Module— Various
ecosystem models have been implemented in FVCOM, including NPZ, NPZD, NPZDB, and
water quality models. To make FVCOM more flexible for ecosystem studies, we have
built a generalized biological module into FVCOM to allow users to select either
a pre-built biological model (such as NPZ, NPZD, etc) or construct their own
biological model using the pre-defined pool of biological variables and
parameterization functions, including zooplankton life-stage models. This module acts like a platform that
allows us to examine the relative importance of different physical and
biological processes under well-calibrated physical fields.
Upstream
Boundary Conditions— For this study, we plan to move the
“upstream” boundary of the GOM/GB FVCOM domain eastward to cut across the SS and
upper slope through Banquereau Bank. This choice
simplifies the cross-shelf bathymetry and separation of along-shelf flow into
inner-shelf and shelfbreak components (Han et al,
1997), and was used in the Hannah et al (2001) model simulations of the seasonal
circulation on the western and central SS.
They used the
We
will not include the potential influence of warm core rings (eg., Flierl and Wroblewski, 1985) and other eddy
features originating in the Gulf Stream (Fig. 1), because the larger regional
and basin-scale models do not yet produce these features accurately enough in
this region for us to use them to construct the boundary conditions along the
open ocean part of FVCOM. The
influence of rings may be minor (e.g., Churchill et al., 2003), however, and we will
be able to infer their potential importance by their omission. As the larger-scale models mature in
this respect, follow-on studies of these processes can be
developed.
FVCOM
Computational Aspects—
With GLOBEC GB Phase 4 support, FVCOM
has been converted into a FORTRAN 95/2K parallelized program to take advantage
of multi-processor computing (Cowles et al., 2003). This implementation uses a SPMD (Single
Program Multiple Data) approach with a message-passing model to perform the
necessary inter-processor communication and synchronization. The physical domain
is decomposed into sub-domains using the METIS graph partitioning
libraries. Each sub-domain is
assigned to a processor for integration of the model equations. The exchange
subroutines utilize non-blocking sends and receive from the MPI (Message Passing
Interface) 2.0 library. The efficiency of the code can be
measured in terms of its speedup and/or scalability on a multiprocessor
computer. Chen’s modeling lab will install a new high-performance 256-processor
super-cluster computer this summer. With this computer, 1-yr model run with data
assimilation and the existing GOM/GB FVCOM grid should take less than 1-day
clocktime. We plan to use this computer with attached
mass storage for the proposed Phase 4B model experiments (1995-1999 hindcasts
and process studies), model/data comparisons, model result analysis and
visualization, and archiving model output and results.
2.3.2.
Biological
Models
We will incorporate a copepod population model and a simple food web model (NPZ) into the plug-in modules of FVCOM. We will draw from our previous modeling work involving Calanus, Pseudocalanus, and other copepod species (Davis, 1984a,c, 1987; Lynch et al., 1998; McGillicuddy et al., 1998; Zakardjian et al., 2003), as well as our food web modeling (Davis, 1987b; Flierl and Davis, 1993; Lewis et al., 1994; Davis and Steele, 1994; Zeldis et al., 1995; Dadou et al. 1996; Ji, 2003, submitted a,b,c).
Population
model — Copepod
dynamics will be modeled using a stage-structured population model containing 15
life stages (egg, N1-6, C1-3, C4M-F, C5M-F, Adult) plus additional diapause
stages (e.g. eggs or CV) as needed.
A standard formulation for the stage-based model will be used (e.g.,
Zakardjian et al., 2003). A potential
problem with using only 15 life stages is artificial diffusion of individuals
through the life stages, and, to prevent this, age-within-stage models have been
developed (
Lower trophic level food web model — We will
explore the possibility of generating temporally evolving 3D phytoplankton
fields from a lower trophic level food web model (e.g. NPZ or NPZD) to provide
food for the copepod population model. We will use one-way coupling whereby the
copepods depend on the food field but do not affect it (e.g. Carlotti, 1998; Batchelder et al.,
2002). In this case, the Z will
represent microzooplankton grazers used solely as a closure term. We can generate realistic 3D
phytoplankton fields using a simple NPZ model (Ji, 2003). It may also be possible to allow the
copepods to graze the P and Z (e.g., Carlotti, 1996),
but this approach may not be necessary or feasible in 3D. The NPZ model will be adjusted so that
the resulting fields approximate the 3D chlorophyll and satellite data. The concept of using an NPZ model to
generate spatially explicit prey fields has been used with an IBM of larval
pollock in the
Plankton food web models are variously complex, ranging
from simple NPZ to models with multiple subcomponents. In the GOM/GB a simple
NPZ (Klein, 1987; Lewis et al., 1994; Franks and Chen, 1996; Franks and Chen,
2001) and a nine-compartment model (Ji, 2003) have been used. The NPZ model coupled with a 3-D
nonlinear, primitive equation, finite-difference ocean circulation model
(ECOM-si, Blumberg and Mellor, 1987) can successfully
approximate 3D phytoplankton fields observed on GB from summer cruises and
satellite data. Robust features,
such as the subsurface maximum and mixing-front induced productivity were
produced with this model (Franks and Chen, 2001). More recently, a
nine-compartment model (Ji, 2003), coupled to ECOM_si and FVCOM, captured the basic seasonal and spatial patterns of nutrients
and phytoplankton on GB. This model
includes 3-N (nitrate, ammonia and silicate), 2-P (large and small), 2-Z (large
and small), and two detrital pools (N and Si). Silicate can limit the spring diatom bloom on GB
(Townsend and Thomas, 2001; Townsend and Thomas, 2002, Ji,
2003).
In
the proposed study, the simple NPZ model will be used due to its capability and
robustness, as well as the availability of observation data for the initial and
boundary conditions. We also will explore the use of separate pools in the model
for Si and N and for P (diatom, non-diatom). The model will run continuously for 3
years from January 1997 to December 1999, a period when we have both nutrient
and phytoplankton data from the GLOBEC GB program. Initial horizontal distributions of
nitrogen, phytoplankton and zooplankton during winter will be derived from
climatological data (e.g. Petrie and Yeats, 2003), satellite imagery and MARMAP
data, respectively. An initial
homogenous vertical distribution also will be specified (as observed in winter).
While the NPZ model is being tested
against the observed data, these same data will be used to generate spatially
and temporally interpolated 3D static prey fields for the copepod population
model. This empirical approach is
complementary to the model-based approach.
Upstream
data – Biological
data for the SS and SW will be obtained from our Canadian colleagues, who
have been actively involved in the GB and Canadian GLOBEC programs as well as in
other studies of the SS and
Biological
transport — We will use concentration-based (Eulerian) rather than
individual-based (Lagrangian) transport for the copepod and food web models.
While we have used both types of models in the past, the use of
concentration-based models allow us to compute fluxes and mass balances directly
and more accurately. This approach
is necessary for quantifying such factors as sustainability of populations in
particular areas. The
concentration-based approach lends itself easily to stage-structured population
models. This straightforward method
avoids the necessity of using super-individual particles or spawning and
removing particles at each time step.
2.3.3.
Numerical
experiments
We
will conduct a series of targeted numerical experiments using prognostic forward
model runs (rather than inverse methods) to address each of the above
hypotheses. Data and model will be
compared using a maximum-likelihood method (Stock, 2005; Stock et al.,
submitted). These process studies will help interpret the basic behavior and
inter-annual variability shown in the 1995-99 hindcast. Detailed tasks and time table for this
work are given in the required supplement on project management and data
exchange.
Working
hypothesis— We will initialize the model with the mean winter
concentrations of each copepod species (in separate model runs). The same model structure will be used
for all species, changing only the parameter values (temperature/food/life-stage
dependent egg production rate, development rate, growth rate, and normalized
stage-dependent mortality) and behaviors, and thus expediting the model
runs. The inputs of characteristic
life history traits of each species together with its initial abundance patterns
should generate its observed characteristic seasonal/spatial patterns. The model
will be run for a complete annual cycle and compared with the 5-year monthly
mean abundance patterns. To examine
inter-annual variation we will model each copepod species during the complete
5-year GLOBEC period 1995-1999, first year by year, then continuously over the 5
years. The result will be a
complete 5-year biological/physical hindcast.
Food versus
Predation— We will
examine the degree of food-dependence and mortality with regard to inter-annual
variability for each species. First
we will confirm that the NPZ model can be used to approximate the 3D
distribution of phytoplankton for the multi-year monthly mean and year-to-year
changes. In parallel, we will use
fixed 3D phytoplankton fields approximated from monthly averaged satellite and
in situ data. We will interpolate
the phytoplankton fields between monthly values to avoid discontinuities. We will use the NPZ model together with
scenarios of salinity and nutrient (N, Si) input
through the NEC, to determine the extent to which phytoplankton
biomass/production on GB is determined by this forcing and the extent to which
the copepod species are affected by it.
We will examine possible effects of temperature and transport during
1995-1999 on the trends in mean abundances of each
species.
Self-sustainabilty—
We will initialize the model with the observed
distribution of each species and exclude input from other regions, to determine
whether the local population is self-sustaining. In particular we will examine the
importance of Calanus input from SW
and/or SS to the GOM/GB population, the input of Pseudocalanus from western GOM to the GB
population, the key source regions for Oithona similis, and whether Centropages typicus
depends on immigration to sustain its population on GB. We will further examine whether resting
eggs can explain high abundance of Centropages hamatus and
Temora longicornis
on the crest of GB. We will
initialize the population as resting eggs on the crest and determine whether the
resulting plume of nauplii and subsequent copepodids matches the observed distributions. We will examine the formation of the Calanus “hole” on GB by initializing
with CVs in the GOM during December and determining the extent to which the hole
forms as a result of gradient advection versus high crest
mortality.
Catastrophic
global warming— Finally we will use boundary forcing that represents a
scenario of catastrophic warming (see FVCOM section). We will run the model for single and
multiple years to determine the impact on the NPZ fields and on each dominant
copepod species.
2.3.4.
Work
schedule— The schedule for the
proposed modeling work together with a description of individual tasks, project
management, dissemination, and timeline are described in the required
supplemental documents.
3.
Significance of Proposed Research– Intellectual Merit
The
proposed work will provide new insights into the role of local dynamics and
large-scale forcing in controlling population dynamics of marine copepods. We believe that the physical/biological
model resulting from the proposed work will be a legacy of the Georges Bank
GLOBEC program by providing a valuable tool that subsequent researchers can use
to study the dynamics of this system in hindcast, nowcast, and forecast modes.
The results of the targeted experiments will provide insights into the degree of
bottom-up and top-down control and the degree of sustainability of copepod
populations under different conditions of external forcing. The work will provide a new
understanding of the impact of basin-scale forcing, including catastrophic
change, on local-scale plankton dynamics.
The resulting spatially explicit model of small and large copepod species
will provide dynamic prey fields for concurrent and subsequent larval fish
modeling studies, leading to a better understanding of recruitment in fish
populations.
4.
Broader Impacts
The
References
Ban, S., H. Lee, A. Shinada, and
T. Toda. 2000. In
situ egg production and hatching
success of the marine copepod Pseudocalanus
newmani in
Batchelder,
Bigelow, H. B. 1926. Plankton of the
offshore waters of the
Bucklin, A., A. M. Bentley and S. P.
Franzen.
1998. Distribution and relative abundance of the copepods Pseudocalanus moultoni
and P. newmani on
Bucklin, A., M. Guarnieri, D.
J. McGillicuddy and R. S. Hill. 2001. Spring-summer
evolution of Pseudocalanusspp. abundance of
Burchard, H., 2002. Applied turbulence
modeling in marine waters. Springer:
Campbell R W, Head E J H 2000 Egg production rates of Calanus finmarchicus in the western
Carlotti, F. and G. Radach,
1996. Seasonal
dynamics of phytoplankton and Calanus
finmarchicus in the
Carlotti, F. and K.U. Wolf, 1998. A Lagrangian ensemble model of Calanus finmarchicus coupled with a 1-D
ecosystem model. Fish. Oceanogr., 7, 191-204.
Chen, C, G. Cowles and R. C.
Beardsley, 2004a. An unstructured grid, finite-volume
coastal ocean model: FVCOM User Manual.
SMAST/UMASSD Technical Report-04-0601, pp183.
Chen, C. and R. C.
Beardsley. 1998. Tidal mixing over
finite-amplitude banks: a model study with application to
Chen, C., H. Liu, and R. Beardsley,
2003a. An unstructured grid,
finite-volume, three-dimensional, primitive equations ocean model: Application
to coastal ocean and estuaries. Journal
of Atmospheric and Ocean Technology,
20 (1), 159–186.
Chen, C., H. Liu, R. C. Beardsley, G. Cowles, J.
Pringle, R. Schlitz, and B. Rothschild, 2003b. Application of FVCOM to the Gulf
of Maine/Georges Bank: Simulated and assimilated modeling studies of
stratification and subtidal circulation. EOS Trans, AGU,
84(52), Ocean Science Meeting Suppl., Abstract
OS51G-08.
Chen, C., J. Qi, H. Liu, C.
Li, H. Lin, R. Walker and K. Gates, 2005d. Tidal Flushing Dynamics in the Satilla River, Georgia: A Comparison between FVCOM and
ECOM-si. Journal of Geophysical Research, to be
submitted.
Chen, C., Q. Xu, R. C. Beardsley, and P. J. S. Franks.,
2003. Modeling Studies of the
Cross-Frontal Water Exchange on
Chen, C., R. C. Beardsley, H. Huang,
H. Liu, and Q. Xu, 2005b. A finite-volume numerical approach for coastal ocean
studies: Comparisons with the finite-difference models. Journal of Geophysical Research, in
revision.
Chen, C., R. C. Beardsley, Q. Xu, G. Cowles, and R. Limeburner, 2005c. Tidal Dynamics in
the
Chen, C., R. Houghton, R. C. Beardsley, Q. Xu, and H. Liu, 2003c. Preliminary results of model dye
experiments on
Chen, C., Wang, T, L.
Wang, J. Blanton, C. Li, H. Huang and H. Lin, 2005e. Tidal-induced flushing process over the estuarine-tidal
creek-salt marsh complex of the Okatee/Collection
River in
Chen, C., Z. Wu, R. C. Beardsley, S.
Shu, and C. Xu,
2005a. Using MM5
to hindcast the ocean surface forcing fields over the
Churchill,
J. H., J. P. Manning, and R. C. Beardsley, 2003. Slope water intrusions onto
Clarke, G.L., 1946. Dynamics of production in a marine area. Ecol. Monogr.
16, 321–337.
Cohen, E. B., and M. D.
Grosslein. 1987. Production on Georges Bank Compared with other shelf
ecosystems. Pp. 383–391, In R.H. Backus and D.W. Bourne (eds.) Georges
Bank. MIT Press. Cambridge, MA. 593 pp.
Corkett C J, and
Cushing. D. H. and J. J. Walsh. 1976. The Ecology of
the Seas.
Dadou,
Davis, C. S. 1983. Laboratory rearing
of marine calanoid copepods. J. Exp. Mar. Biol. Ecol., 71,
119-133.
Davis, C. S. 1984a. Predatory control
of copepod seasonal cycles on
Davis, C. S. 1984b. Food concentrations on
Davis, C. S. 1984c. Interaction of a
copepod population with the mean circulation on
Davis, C. S. 1987a. Components of the zooplankton
production cycle in the temperate ocean. J. Mar. Res., 45,
947-983.
Davis, C. S. 1987b. Zooplankton Life
Cycles. pp. 256-267. In:
Davis, C. S. and J. H.
Steele. 1994. Modeling upper ocean
biological-physical processes. URIP Workshop Report, WHOI TECH RPT 94-32, 65
pp.
Drinkwater, K. F., D. B. Mountain, and
A. Herman. 2003. Variability in the Slope Water
Properties off
Dudhia, J., D. Gill, K. Manning, W. Wang, C. Bruyere, J. Wilson, and S. Kelly, 2003: PSU/NCAR mesoscale
modeling system tutorial class notes and user’s guide, MM5 modeling system
version 3, Mesoscale and Microscale Meteorology
Division,
Durbin, E. G., J. A. Runge, R. G. Campbell, P. R. Garrahan, M. C. Cascas and S.
Plourde. 1997. Late fall-early winter recruitment of
Calanus finmarchicus on Georges Bank., Mar. Ecol. Prog.
Ser., 151,
103-14.
Durbin, E.G., Garrahan, P.R., Casas, M.C.
2000. Abundance
and distribution of Calanus finmarchicus on
Durbin, E.G., M.C. Casas.
Abundance, spatial distribution, and interannual
variability of copepods on
Durbin, E.G., R. Campbell, M. Casas, B. Niehoff, J. Runge, M.
Wagner. 2003. Interannual Variation in phytoplankton blooms and
zooplankton productivity and abundance in the
Dzierzbicka-Glowacka,
L. 2004. Growth
and development of copepodite stages of Pseudocalanus spp., J. Plankton
Res., 26, 49-60.
Fairall, C. W., E. F. Bradley, D. P. Rogers, J. B. Edson, and G. S. Young, 1996. Bulk parameterization of
air-sea fluxes for tropic ocean global atmosphere coupled-ocean atmosphere
response experiment. Journal of Geophysical Research, 101
(C2), 3747-3764.
Fairall, C. W., E. F. Bradley, J.E. Hare, A.A. Grachev, and J. B. Edson, 2003.
Bulk parameterization of air-sea fluxes:
updates and verification for the COARE algorithm. J. Climate, 16,
571-590.
Flierl, G. R. and C. S.
Davis. 1993. Biological effects of
Flierl, G.R. and Wroblewski, J.S. 1985. The possible
influence of warm core
Franks, P.J.S. and C. Chen,
1996. Plankton production in tidal fronts: A
model of
Franks, P.J.S. and C. Chen,
2001. A 3-D prognostic
numerical model study of the
Fratantoni, P. S.
and R. S. Pickart, 2005a. The
western
Fratantoni, P. S.
and R. S. Pickart, 2005b. Structure
and alongstream evolution of the shelfbreak jet in the western
Frost B W. 1989. A taxonomy of
the marine calanoic copepod genus Pseudocalanus. Can J Zool 67:
525±551
Galperin, B., L. H. Kantha, S. Hassid,
and A. Rosati, 1988. A quasi-equilibrium turbulent energy
model for geophysical flows. Journal of the Atmospheric Sciences, 45, 55–62.
GLOBEC, 1991a. U. S. GLOBEC: Initial Science Plan, Report Number
1.
GLOBEC, 1991b. U. S. GLOBEC:
GLOBEC, 1992. U. S. GLOBEC:
GLOBEC, 1996. U. S. GLOBEC:
Northeast Pacific Implementation Plan, Report No.
17.
GLOBEC, 1997. U. S. GLOBEC:
Workshop on Modeling the Southern Ocean Ecosystem, Report No.
18.
GLOBEC, 2000. GLOBEC in the
Grell, G. A., J. Dudhia, and D. R.
Stauffer, 1994: A description of the Fifth-Generation Penn State/NCAR Mesoscale
Model (MM5). NCAR Technical Note, NCAR/TN 398+STR,
117pp.
Grosslein, M. S., and R. C. Hennemuth,
1973. Spawning stock and other factors related
to recruitment of haddock on
Hall,
D. J. 1964. An
experimental approach to the dynamics of a natural population of Daphnia
galeata mendotae . Ecology 45 (1),
94-112.
Han, G.,
C. E. Hannah, J. W. Loder, and P. C. Smith,
1997. Seasonal variation of
the three-dimensional mean circulation over the Scotian Shelf. J.
Geophysical Research, 102(C1), 1011-1025.
Hannah, C. G., J. A. Shore,
J. W. Loder, and C. E. Naimie, 2001.
Seasonal circulation on the western and central Scotian
Shelf. J. Phys. Oceanography, 31(2), 591-615.
Hannah, C.G., Naimie, C.E.,
Loder, J.W., Werner, F.E. 1998 Upper-ocean transport
mechanisms from the 1911.
Head, E.J.H., Harris, L.R., Petrie, B., 1999.
Distribution of Calanus spp. on and around the
Nova Scotia Shelf in April: evidence for an offshore source of Calanus
finmarchicus to the central and western regions. Canadian
Journal of Aquatic Sciences 56, 2463-2476.
Heath, M.R., Backhaus, J.O., Richardson, K., McKenzie,
E., Slagstad, D., Beare, D.,
Dunn, J., Fraser, J.G., Gallego, A., Hainbucher, D., Hay, S., Jónasdóttir, S., Madden, H., Mardaljevic, J., Schacht, A., 1999. Climate fluctuations and the spring invasion of the
Hermann, A. J., S. Hinckley, B. A. Megrey and J. M. Napp. 2001 Applied and theoretical
considerations for constructing spatially explicit individual-based models of
marine larval fish that include multiple trophic levels, ICES J. Mar. Sci. 58:1030-1041
Hinrichsen,
H.H., C. Möllmann, R. Voss, F.W. Köster, and G. Kornilovs. 2002. Biophysical modeling
of larval Baltic cod (Gadus morhua) growth and survival.
Hjort, J . 1914. Fluctuations in the
great fisheries of
Huang, H., C. Chen, G. Cowles, R. C.
Beardsley, and K. Hedstrom, 2005a. Sensitivity of the numerical solution to unstructured
triangular grids: A validation experiment of FVCOM for the Rossby equatorial soliton.
Huang, H., C. Chen, J. O. Blanton, and
F. A. Andrade, 2005d. Tidal current
asymmetry and implication to variability of the dissolved oxygen over shallow
tidal creeks: an application of FVCOM to the Okatee
River, South Carolina. Journal of
Geophysical Reseqarch, to be submitted.
Huang, H., C. Chen, R. C. Beardsley,
and K. Hedstrom, 2005c. Validation experiments of FVCOM for the wind-driven
flow in an elongated rotating basin: A comparison with analytical solution.
Deep Sea Research
II-GLOBEC/GB special issue, to be submitted.
Huang, H., C. Chen, R. C. Beardsley,
and K. Hedstrom. 2005b. Capability and Accuracy of the unstructured grid
model to simulate the coastal hydraulic jump: A validation experiment of FVCOM
via horizontal advection schemes.
Ji, R., 2003. Biological and physical
processes controlling the spring phytoplankton bloom dynamics on
Ji, R., C. Chen, P. J. S. Franks, D.W.
Townsend, E.G. Durbin, R. C. Beardsley, R.G. Lough, and R.W. Houghton,
2004. Spring bloom and associated
lower trophic level food web dynamics on
Ji, R., C. Chen, P. J. S. Franks, D.W.
Townsend, E.G. Durbin, R. C. Beardsley, R.G. Lough, and R.W. Houghton,
2004. Effects of topography and
tidal mixing front on the spring phytoplankton bloom on
Ji, R., C. Chen, P. J. S. Franks, D.W.
Townsend, E.G. Durbin, R. C. Beardsley, R.G. Lough, and R.W. Houghton,
2004. The impact of Scotian Shelf
Water “cross-over” on the plankton dynamics on
Johnson, C., J. Pringle, and C.
Chen. Transport and
retention of dormant copepods in the
Klein Breteler WCM, Fransz HG, Gonzalez
SR (1982) Growth and development of four calanoid
copepod species under experimental and natural conditions.
Klein Breteler WCM, Gonzalez SR (1986) Culture and development of
Temora longicornis
(Copepoda, Calanoida) at
different conditions of temperature and food. Syllogeus 58:71–84
Klein Breteler WCM, Gonzalez SR, Schogt
N (1995) Development of Pseudocalanus elongatus (Copepoda, Calanoida) cultured at different temperature and food
conditions. Mar Ecol Prog Ser
119:99–110
Klein, P., 1987.
A simulation of some physical and biological
interactions.
Lee, H., S. Ban, T. Ikeda and T. Matsuishi. 2003. Effect of temperature on development, growth and
reproduction in the marine copepod Pseudocalanus newmani at satiating food condition. J. Plankton Res.
25, 261-271.
Lewis, C. V. W., C. Chen, and C. S.
Davis. 2001. Variability in wind
forcing and its effect on circulation and plankton transport over
Lewis, C. V., C. S. Davis, and G.
Gawarkiewcz. 1994. Wind-forced biological-physical dynamics on an
isolated off-shore bank. Deep-Sea Res.
41, 51–73.
Li, X., D. J. McGillicuddy, E. G. Durbin, P. H. Wiebe. Biological control of the vernal
population increase of Calanus
finmarchicus on
Lindeman, R. L. 1942. The trophic-dynamic
aspect of ecology. Ecology,
23, 399-418.
Lindley J A, and H G Hunt. 1989. The distribution
of Labidocera wollastoni
and Centropages hamatus in
the
Lindley JA 1990 Distribution of overwintering calanoid copepods
eggs in sea bed sediments around southern
Lough, R. G., and D. G.
Mountain. 1996. Effect of
small-scale turbulence on feeding rates of larval cod and haddock in stratified
water on
Lough, R.G., E. M. Caldarone,
L. J. Buckley, E. A. Broughton, M. E. Kiladis, and B.
R. Burns, 1996. Vertical distribution of cod and haddock eggs and larvae feeding
and condition in stratified and mixed waters on southern 1904.
Lynch, D. R., Gentleman, W. C., McGillicuddy, D. J. and C. S. Davis, 1998. Biological/ physical simulations of Calanus finmarchicus population dynamics
in the
Maps, F., J.A. Runge, B. Zakardjian and P. Joly. 2005. Egg
production and hatching success of Temora longicornis
(Copepoda, Calanoida) in
the southern
Marcus, N. 1996. Ecological and evolutionary significance of resting
eggs in marine copepods: past, present, and future studies. Hydrobiologia,
320:
141–152.
Marcus, N. H. and R. V.
Lutz. 1998. Longevity of subitaneous and diapause eggs of Centropages hamatus
(Copepoda: Calanoida) from
the northern
McGillicuddy, D. J. Jr. and A. Bucklin. 2002. Intermingling of two Pseudocalanus species on
McGillicuddy, D. J., D. R. Lynch, A. M. Moore, W. C. Gentleman, C.
S. Davis, and C. J. Meise. 1998. An adjoint data
assimilation approach to the diagnosis of physical and biological controls on
Pseudocalanus spp. populations in the
McLaren IA, Laberge E, Corkett CJ, Sevigny J-M 1989a Life
cycles of four species of Pseudocalanus in Nova
Scotia. Can J Zool 67: 552-558
McLaren,
McLaren,
McLaren,
Meise, C.J. and J. E. O'Reilly, 1996. Spatial and seasonal patterns in abundance and
age-composition of Calanus finmarchicus in the
1987,
Deep-Sea Res. II, 7, 1473
1501
Meise-Munns, C., J. Green, M. Ingham, and D. Mountain,
1990. Interannual variability in the
copepod populations of
Mellor, G. L. and T. Yamada,
1982. Development
of a turbulence closure model for geophysical fluid problem. Reviews of Geophysics and
Space. Physics, 20, 851–875.
Miller, C. B., T. J. Cowles, P. H. Wiebe, N. J. Copley, and H. Grigg,
1991. Phenology in Calanus finmarchicus:
Hypotheses about control mechanisms, Mar. Ecol. Progr. Ser., 72, 79-91,.
Miller, C.B., Lynch, D.R., Carlotti, F., Gentleman,W., Lewis,V.W., 1998. Coupling of an individual-based population dynamic model of
Calanus finmarchicus to a circulation model for the
Nixon, S. W. 1988. Physical energy
inputs and the comparative ecology of lake and marine ecosystems. Limnol. Oceanogr.,
33, 1005-1025
Odum, H. T. 1957. Trophic structure and
productivity of
Ohman, M. D., J. A. Runge, E. G. Durbin, D. B. Field and B.
Niehoff.
2002. On birth and death in the sea. Hydrobiol., 480,
55-68.
Osgood, K. E. and D. M. Checkley. 1997.
Seasonal variations in a deep aggregation of Calanus pacificus in the 69.
Petrie, B.
and P. Yeats, 2000. Annual and
interannual variability of nutrients and their
estimated fluxes in the Scotian Shelf-Gulf of
Plourde, S., and J. A. Runge. 1993. Reproduction of the planktonic copepod,
Calanus finmarchicus, in the Lower St. Lawrence Estuary: Relation to the
cycle of phytoplankton production and evidence for a Calanus pump, Mar.\
Ecol. Progr. Ser., 102,
217-227.
Reiss, C. S.,
1244.
Runge, J.A., S. Plourde, P. Joly, E. Durbin and B.
Niehoff.
Characteristics of egg production of the planktonic copepod, Calanus finmarchicus, on
Sabatini, M. and Kiørboe,T. 1994. Egg production, growth and
development of the cyclopoid copepod Oithona
similis. J. Plankton Res., 16, 1329–1351.
Sameoto,
Sarmiento, J. L., R. Slater, M. J. R. Fasham, H. W. Ducklow, J. R. Toggeweiler and G. T. Evans, 1993. A
seasonal three-dimensional ecosystem model of nitrogen cycling in the
Saumweber, W. J. and E. G. Durbin. The
implications of energetic limitation for diapausing Calanus finmarchicus: Towards a Gulf of
Maine Calanus budget. submitted to Deep Sea Res. II
Sissenwine, M. P., E. B. Cohen, and M. D. Grosslein, 1984.
Structure of the
Smagorinsky, J., 1963.
General
circulation experiments with the primitive equations, I. The basic experi-ment.
Monthly Weather Review, 91, 99–164.
Smith, P.C., R.W. Houghton, R.G.
Fairbanks, and
Steele, J. H., 1974. The Structure
of Marine Ecosystems.
Stock, C. A., 2005. Testing hypotheses concerning the
Initiation and development of blooms of the toxic dinoflagellate Alexandrium fundyense in the western
Sundby, S. 2000. Recruitment of Atlantic cod stocks in
relation to temperature and advection of copepod populations. Sarsia,
85, 277-298.
Teal, J. M. 1962. Energy Flow in the Salt Marsh
Ecosystem of
Townsend, D.W. and A.C. Thomas,
2001. Winter-spring transition of phytoplankton chlorophyll and inorganic
nutrients on
Townsend, D.W. and M. Thomas,
2002. Springtime nutrient
and phytoplankton dynamics on
Townsend, D.W. and N.R.
Pettigrew. 1997. Nitrogen
limitation of secondary production on
Townsend, D.W.,A.C. Thomas,
L.M. Mayer, M. Thomas and J. Quinlan. 2004. Oceanography of the
Turner, J. T. 2004. The importance of small planktonic copepods and their
roles in pelagic marine food webs. Zoological Studies, 43,
255-266.
Wiebe, P. H., R. Beardsley, D. Mountain, and A.
Bucklin. 2002. U.S. GLOBEC Northwest
Atlantic/Georges Bank Program, Oceanography, 15, 12-29.
Wiebe, P.H., A.W. Morton, A.M. Bradley, R.H. Backus, J.E.
Craddock, T.J. Cowles, V.A.Barber, and G.R. Flierl.
1985. New developments in the MOCNESS, an apparatus for sampling zooplankton and
micronekton. Mar. Biol. 87:
313-323.
Zakardjian, Bruno. A., J. Sheng, J. A. Runge, I. McLaren, S. Plourde, K. R. Thompson, and Y. Gratton . 2003. Effects of temperature and circulation on
the population dynamics of Calanus finmarchicus in the
Zeldis, J. R., C. S. Davis, M. R. James, S. L. Ballara, W. E. Booth, and F. H. Chang. 1995. Salp
grazing in a larval fish habitat: effects on phytoplankton abundance, vertical
distribution, and species composition.
Mar. Ecol. Prog. Ser., 126,
267–283.
Zhao, L., C. Chen, and B. Rothschild,
2005. Tidal dynamics and eddy
shedding in the
[1] We note that several groups of other investigators (e.g., J. Wilkens and D. Haidvogel at Rutgers and D. Wright, C. Hannah, and others at BIO) are examining how well existing North Atlantic large regional (the Rutgers Northeast North Atlantic ROMs) and basin-scale (e.g., HYCOM, MERCATOR, OPA, POP3) models can hindcast observed physical conditions over the Northeast America continental margin between Cape Hatteras and the Grand Banks. In particular, Loder and co-workers at BIO have just completed a long-term moored array study over the Scotian slope and the ongoing physical/biological transect data being collected in AZMP both provide an extensive data set for detailed comparison with large-scale model hindcasts. We will follow their work closely during Phase 4B to help determine to what extent these larger-scale models can provide accurate boundary conditions along the North American Atlantic margin, including the shelfbreak/slope current system and the influence of Gulf Stream eddies and warm-core rings as they move along the margin, with the idea of using this capability when proven to drive our regional FVCOM integrated model system in future studies.