Known Software Problems

There are two known problems when working with Perl and the Bioinformatic Toolbox 2.0.

Possible Perl error message with bioperldemo

The demonstration bioperldemo was originally implemented with Bioperl version 1.2.3. If you don't have a complete installation of Perl on your system, using the current release of Bioperl version 1.4 can cause an error message . This happens when MW_BLAST.pl in bioperldemo is used to generate fresh BLAST results rather then using the sample results included with the Bioinformatics Toolbox.

Warning message with Bioperl 1.4

In Bioperl version 1.4 there is a new function, GuessSeqFormat.pm that includes a warnings.pm dependency. A message tells you that Perl can't find warnings.pm in your Perl path. You can correct this error by commenting out the warnings dependency in GuessSeqFormat.pm or downloading the file warnings.pm and copying it in your Bioperl installation directory.


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