| Bioinformatics Toolbox 2.0.1 Release Notes | |
The Bioinformatics Toolbox Version 2.0.1 includes the following known software and documentation problems.
In Bioinformatics Toolbox 2.0.1 the functions seqlogo, seqshowwords, seqshoworfs, and showalignment use Java based figures. Currently on the Macintosh, Java figures are not enabled by default. If you use these functions on a Macintosh, you should start MATLAB with
matlab -useJavaFigures
Some functionality does not work with modal windows. For example running a Bioinformatics Toolbox demo opens a blank quest dialog box. A work around is to minimize and maximize the quest dialog box to force X-windows to refresh it.
The demonstration bioperldemo was originally implemented with Bioperl version 1.2.3. If you don't have a complete installation of Perl on your system, using the current release of Bioperl version 1.4 can cause an error message . This happens when MW_BLAST.pl in bioperldemo is used to generate fresh BLAST results rather then using the sample results included with the Bioinformatics Toolbox.
In Bioperl version 1.4 there is a new function, GuessSeqFormat.pm that includes a warnings.pm dependency. A message tells you that Perl can't find warnings.pm in your Perl path. You can correct this error by commenting out the warnings dependency in GuessSeqFormat.pm or downloading the file warnings.pm to your Bioperl installation directory.
| | Major Bug Fixes | Bioinformatics Toolbox 2.0 Release Notes | |
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