| Bioinformatics Toolbox | |
This chapter is a reference for the functions in the Bioinformatics Toolbox. Functions are grouped into the following categories.
| Data Formats and Databases | Get data from Web data bases into MATLAB and ead and write to files within MATLAB using specific data formats. |
| Sequence Conversion | Convert nucleotide and amino acid sequences. |
| Sequence Statistics | List of sequence statistics functions |
| Sequence Utilities | List of sequence utilities functions |
| Pairwise Sequence Alignment | List of pairwise sequence alignment functions |
| Statistical Learning | List of statistical functions. |
| Protein Analysis | List of protein analysis functions. |
| Trace Tools | List of functions for analysis of nucleotide traces. |
| Profile Hidden Markov Models | List of Hidden Markov Model functions. |
| Microarray File Formats | List of microarray file format functions. |
| Microarray Visualization | List of microarray visualization functions. |
| Microarray Normalization and Filtering | List of microarray normalization and filtering functions. |
| Microarray Utility Functions | List of microarray utility functions |
| Mass Spectrometry Preprocessing and Visualization | Preprocess raw data mass spectrometry data from instruments, and analyze spectra to identify patterns and compounds. |
| Scoring Matrices | List of scoring matrices. |
| Phylogenetic Tree Tools | List of functions for phylogenetic tree analysis. |
| Phylogenetic Tree Methods | List of methods for the phytree object. |
| Graph Visualization Methods | List of methods for the biograph object. |
| Tutorials, Demos, and Examples | Demonstrations for using the Bioinformatic Toolbox functions with real applications. |
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