Data Formats and Databases :: Functions - Categorical List (Bioinformatics Toolbox)

Bioinformatics Toolbox

Data Formats and Databases

Use these functions to get data from Web data bases into MATLAB., use these functions to read and write to files within MATLAB using specific data formats.

blastread	Read data from NCBI BLAST report file
emblread	Read data from EMBL file
fastaread	Read data from FASTA file
fastawrite	Write to file with FASTA format
galread	Read microarray data from a GenePix array list file
genbankread	Read data from a GenBank file
genpeptread	Read data from a GenPept file
geosoftread	Read data from a Gene Expression Omnibus (GEO) SOFT file
getblast	Get BLAST report from NCBI web site
getembl	Retrieve sequence information from EMBL database
getgenbank	Retrieve sequence information from GenBank database
getgenpept	Retrieve sequence information from GenPept database
getgeodata	Get Gene Expression Omnibus (GEO) data
gethmmalignment	Retrieve multiple aligned sequences from the PFAM database
gethmmprof	Retrieve profile hidden Markov models from the PFAM database
gethmmtree	Get phylogenetic tree data from PFAM database
getpdb	Retrieve protein structure data from PDB database
getpir	Retrieve sequence data from PIR-PSD database
gprread	Read microarray data from a GenePix Results (GPR) file
imageneread	Read microarray data from an ImaGene Results file
multialignread	Read multiple sequence alignment file
pdbread	Read data from Protein Data Bank (PDB) file
pfamhmmread	Read data from a PFAM-HMM file
phytreeread	Read phylogenetic tree files
pirread	Read data from PIR file
scfread	Read trace data from SCF file
sptread	Read data from a SPOT file

Functions – Categorical List

Sequence Conversion