| aacount | Count the amino acids in a sequence |
| aminolookup | Display amino acid codes, integers, abbreviations, names, and
codons |
| basecount | Count nucleotides in a sequence |
| baselookup | Display nucleotide codes, integers, names, and abbreviations |
| codoncount | Count codons in nucleotide sequence |
| dimercount | Count dimers in a sequence |
| nmercount | Count the number of n-mers in a nucleotide or amino acid sequence |
| ntdensity | Plot the density of nucleotides along a sequence |
| seqshowwords | Graphically display the words in a sequence |
| seqwordcount | Count the number of occurrences of a word in a sequence |
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