Sequence Utilities

List of sequence utilities functions

aminolookupDisplay amino acid codes, integers, abbreviations, names, and codons
baselookupDisplay nucleotide codes, integers, names, and abbreviations
blastncbiGenerate a remote BLAST request
geneticcodeReturn nucleotide codon to amino acid mapping
joinseqJoin two sequences to produce the shortest supersequence
palindromesFind palindromes in a sequence
randseqGenerate random sequence from finite alphabet
restrictSplit nucleotide sequence at specified restriction site
revgeneticcodeGet the reverse mapping for a genetic code
seqconsensusCalculate a consensus sequence
seqdispFormat long sequence output for easy viewing
seqlogoDisplay sequence logo for nucleotide and amino acid sequences
seqmatchFind matches for every string in a library
seqprofileCalculate a sequence profile from a set of multiply aligned sequences
seqshoworfsDisplay open reading frames in a sequence


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