Profile Hidden Markov Models :: Functions - Categorical List (Bioinformatics Toolbox)

Bioinformatics Toolbox

Profile Hidden Markov Models

List of Hidden Markov Model functions.

gethmmalignment	Retrieve multiple aligned sequences from the PFAM database
gethmmprof	Retrieve profile hidden Markov models from the PFAM database
hmmprofalign	Align a query sequence to a profile using hidden Markov model based alignment
hmmprofestimate	Estimate profile HMM parameters using pseudocounts
hmmprofgenerate	Generate a random sequence drawn from the profile HMM
hmmprofmerge	Concatenate the prealigned strings of several sequences to a profile HMM
hmmprofstruct	Create a profile HMM structure
pfamhmmread	Read data from a PFAM-HMM file
showhmmprof	Plot an HMM profile

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