Bioinformatics Toolbox

Tutorials, Demos, and Examples

Sequence analysis

• seqstatsdemo — Sequence statistics tutorial example

• aligndemo — Basic sequence alignment tutorial

• alignsigdemo — How to estimate the significance of sequence alignments

• alignscoringdemo — Tutorial showing the use of scoring matrices

Hidden Markov Model profiles

• hmmprofdemo — HMM profile alignment tutorial example

Microarray analysis

• mousedemo — Microarray normalization and visualization example

• yeastdemo — Microarray data analysis example

• biclusterdemo — Clustergram functionality examples

Phylogenetic Analysis

• primatesdemo — Building a phylogenetic tree for the hominidae species

• hivdemo — Analyzing the origin of the HIV with phylogenetic trees

External software interface

• bioperldemo — Calling Bioperl functions from within MATLAB

• biojavademo — Calling BioJava functions from within MATLAB

External web database interface

• biowebservicedemo — How to use a Simple Object Access Protocol (SOAP) based web service from within MATLAB

Graph Visualization Methods

Functions — Alphabetical List

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