| Bioinformatics Toolbox | |
Read data from a GenBank file
GenBankData = genbankread('File')
File | GenBank formatted file (ASCII text file). Enter a filename, a path and filename, or a URL pointing to a file. File can also be a MATLAB character array that contains the text of a GenBank formatted file. |
GenBankData | MATLAB structure with fields corresponding to GenBank data. |
genbankread reads data from a GenBank formatted file into a MATLAB structure.
GenBankData = genbankread('File') reads in a GenBank formatted file (File) and creates a structure (Data) containing fields corresponding to the GenBank keywords. Each separate sequence listed in the output structure (GenBankData) is stored as a separate element of the structure.
GenBankData contains the following fields:
LocusName LocusSequenceLength LocusMoleculeType LocusGenBankDivision LocusModificationDate Definition Accession Version GI Keywords Segment Source SourceOrganism Reference.Number Reference.Authors Reference.Title Reference.Journal Reference.MedLine Reference.PubMed Reference.Remark Comment Features BaseCount Sequence
Get sequence information for the gene HEXA, store in a file, and then read back into MATLAB.
getgenbank('nm_000520', 'ToFile', 'TaySachs_Gene.txt')
s = genbankread('TaySachs_Gene.txt')
Bioinformatics Toolbox functions emblread, getgenbank, fastaread, genpeptread, getgenbank, scfread
| | galread | geneentropyfilter | |
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