| Bioinformatics Toolbox | |
Read data from a GenPept file
GenPeptData = genpeptread('File')
File | GenPept formatted file (ASCII text file). Enter a filename, a path and filename, or a URL pointing to a file. File can also be a MATLAB character array that contains the text of a GenPept file. |
genpeptread reads data from a GenPept formatted file into a MATLAB structure.
Note NCBI has recently changed the name of their protein search engine from GenPept to Entrez Protein. However, the function names in the Bioinformatics Toolbox (getgenpept, genpeptread) are unchanged representing the still-used GenPept report format. |
GenPeptData = genpeptread('File') reads in the GenPept formatted sequence from File and creates a structure GenPeptData, containing fields corresponding to the GenPept keywords. Each separate sequence listed in File is stored as a separate element of the structure. GenPeptDATA contains these fields:
LocusName LocusSequenceLength LocusMoleculeType LocusGenBankDivision LocusModificationDate Definition Accession PID Version GI DBSource Keywords Source SourceDatabase SourceOrganism Reference.Number Reference.Authors Reference.Title Reference.Journal Reference.MedLine Reference.PubMed Reference.Remark Comment Features Weight Length Sequence
Get sequence information for the protein coded by the gene HEXA, save to a file, and then read back into MATLAB.
getgenpept('p06865', 'ToFile', 'TaySachs_Protein.txt')
genpeptread('TaySachs_Protein.txt')
Bioinformatics Toolbox functions fastaread, genbankread, getgenpept, pdbread, pirread
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