| Bioinformatics Toolbox | |
Read data from a Gene Expression Omnibus (GEO) SOFT file
GEOSOFTData = geosoftread('File')
File | Gene Expression Omnibus (GEO) formatted file (ASCII text file). Enter a filename, a path and filename, or a URL pointing to a file. File can also be a MATLAB character array that contains the text of a GEO file. |
geosoftread reads data from a Gene Expression Omnibus (GEO) SOFT formatted file (File), and creates a MATLAB structure (GEOSOFTdata) with the following fields:
Scope Accession Header ColumnDescriptions ColumnNames Data
Fields correspond to the GenBank keywords. Each separate entry listed in File is stored as a separate element of the structure.
Get data from the GEO web site and save it to a file.
geodata = getgeodata('GSM3258','ToFile','GSM3258.txt');
Use geosoftread to access a local copy from disk instead of accessing it from the GEO web site.
geodata = geosoftread('GSM3258.txt')
Bioinformatics Toolbox functions galread, getgeodata, gprread, sptread
| | genpeptread | get (phytree) | |
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