| Bioinformatics Toolbox | |
Count the number of n-mers in a nucleotide or amino acid sequence
nmercount(Seq, Length)
Seq | Nucleotide or amino acid sequence. Enter a character string or a structure with the field Sequence. |
Length | Length of n-mer to count. Enter an integer. |
nmercount(Seq, Length) counts the number of n-mers or patterns of a specific length in a sequence.
Count the number of n-mers in an amino acid sequence and display the first six rows in the cell array.
S = getgenpept('AAA59174','SequenceOnly',true)
nmers = nmercount(S,4);
nmers(1:6,:)
ans =
'apes' [2]
'dfrd' [2]
'eslk' [2]
'frdl' [2]
'gnys' [2]
'lkel' [2]
Bioinformatics Toolbox functions basecount, codoncount, dimercount
| | multialignread | nt2aa | |
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