nuc44

Return a NUC44 scoring matrix for nucleotide sequences

Syntax

ScoringMatrix = nuc44

Description

The nuc44 scoring matrix uses ambiguous nucleotide codes and probabilities rounded to the nearest integer.

Scale = 0.277316

Expected score = -1.7495024, Entropy = 0.5164710 bits

Lowest score = -4, Highest score = 5

Order: A C G T R Y K M S W B D H V N

[Matrix, MatrixInfo] = nuc44 returns the structure of information about the matrix with Name and Order.


© 1994-2005 The MathWorks, Inc.