Bioinformatics toolbox $toolbox/matlab/icons/matlabicon.gif The Bioinformatics Toolbox is a collection of MATLAB functions for analysis of genomic and proteomic data. It includes functions for sequence analysis, microarray data analysis, and proteomic data analysis. The Toolbox also contains visualization tools and functions for statistical learning and data mining.

]]> Sequence Analysis Calculating and visualizing sequence statistics html/seqstatsdemo.html seqstatsdemo Aligning pairs of sequences html/aligndemo.html aligndemo Assessing the significance of an alignment html/alignsigdemo.html alignsigdemo Using scoring matrices to measure evolutionary distance html/alignscoringdemo.html alignscoringdemo Using HMMs for sequence profile analysis html/hmmprofdemo.html hmmprofdemo Building a phylogenetic tree for the hominidae species html/primatesdemo.html primatesdemo Creating a phylogenetic tree from HIV/SIV infected organisms html/hivdemo.html hivdemo Microarray Data Analysis Visualizing microarray data html/mousedemo.html mousedemo Performing microarray cluster analysis html/yeastdemo.html yeastdemo Working with Affymetrix Gene Chip data html/affydemo.html affydemo Mass Spectrometry Data Analysis Pre-processing raw mass spectrometry data html/mspreprodemo.html mspreprodemo Identifying significant features and classifying protein profiles html/cancerdetectdemo.html cancerdetectdemo Batch processing of spectra using distributed computing html/biodistcompdemo.html biodistcompdemo Visualization Tools Working with the clustergram function html/biclusterdemo.html biclusterdemo Visually representing interconnected data html/biographdemo.html biographdemo Using MATLAB With Other Applications Calling Bioperl functions in MATLAB html/bioperldemo.html bioperldemo Calling BioJava functions in MATLAB html/biojavademo.html biojavademo Connecting to a SOAP based web service html/biowebservicedemo.html biowebservicedemo Calling MATLAB from a Web page using ActiveX html/biovbscript.html biovbscript Connecting to RasMol using DDE html/rasmolddedemo.html rasmolddedemo