# # REBASE version 412 emboss_e.412 # # =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= # REBASE, The Restriction Enzyme Database http://rebase.neb.com # Copyright (c) Dr. Richard J. Roberts, 2004. All rights reserved. # =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= # # Rich Roberts Nov 29 2004 # # REBASE enzyme patterns for EMBOSS (embossre.enz) # # Format: # # namepatternlenncutsbluntc1c2c3c4 # # Where: # name = name of enzyme # pattern = recognition site # len = length of pattern # ncuts = number of cuts made by enzyme # Zero represents unknown # blunt = true if blunt end cut, false if sticky # c1 = First 5' cut # c2 = First 3' cut # c3 = Second 5' cut # c4 = Second 3' cut # # Examples: # AAC^TGG -> 6 2 1 3 3 0 0 # A^ACTGG -> 6 2 0 1 5 0 0 # AACTGG -> 6 0 0 0 0 0 0 # AACTGG(-5/-1) -> 6 2 0 1 5 0 0 # (8/13)GACNNNNNNTCA(12/7) -> 12 4 0 -9 -14 24 19 # # i.e. cuts are always to the right of the given # residue and sequences are always with reference to # the 5' strand. # Sequences are numbered ... -3 -2 -1 1 2 3 ... with # the first residue of the pattern at base number 1. # # AarI CACCTGC 7 2 0 11 15 0 0 AasI GACNNNNNNGTC 12 2 0 7 5 0 0 AatI AGGCCT 6 2 1 3 3 0 0 AatII GACGTC 6 2 0 5 1 0 0 AccI GTMKAC 6 2 0 2 4 0 0 AccII CGCG 4 2 1 2 2 0 0 AccIII TCCGGA 6 2 0 1 5 0 0 Acc16I TGCGCA 6 2 1 3 3 0 0 Acc36I ACCTGC 6 2 0 10 14 0 0 Acc65I GGTACC 6 2 0 1 5 0 0 AccB1I GGYRCC 6 2 0 1 5 0 0 AccB7I CCANNNNNTGG 11 2 0 7 4 0 0 AccBSI CCGCTC 6 2 1 3 3 0 0 AceIII cagctc 6 2 0 13 17 0 0 AciI CCGC 4 2 0 1 3 0 0 AclI AACGTT 6 2 0 2 4 0 0 AclWI GGATC 5 2 0 9 10 0 0 AcsI RAATTY 6 2 0 1 5 0 0 AcuI CTGAAG 6 2 0 22 20 0 0 AcvI CACGTG 6 2 1 3 3 0 0 AcyI GRCGYC 6 2 0 2 4 0 0 AdeI CACNNNGTG 9 2 0 6 3 0 0 AfaI GTAC 4 2 1 2 2 0 0 AfeI AGCGCT 6 2 1 3 3 0 0 AflII CTTAAG 6 2 0 1 5 0 0 AflIII ACRYGT 6 2 0 1 5 0 0 AgeI ACCGGT 6 2 0 1 5 0 0 AhaIII tttaaa 6 2 1 3 3 0 0 AhdI GACNNNNNGTC 11 2 0 6 5 0 0 AhlI ACTAGT 6 2 0 1 5 0 0 AjnI CCWGG 5 2 0 -1 5 0 0 AleI CACNNNNGTG 10 2 1 5 5 0 0 AlfI GCANNNNNNTGC 12 4 0 -11 -13 24 22 AloI GAACNNNNNNTCC 13 4 0 -8 -13 25 20 AluI AGCT 4 2 1 2 2 0 0 AlwI GGATC 5 2 0 9 10 0 0 Alw21I GWGCWC 6 2 0 5 1 0 0 Alw26I GTCTC 5 2 0 6 10 0 0 Alw44I GTGCAC 6 2 0 1 5 0 0 AlwNI CAGNNNCTG 9 2 0 6 3 0 0 Ama87I CYCGRG 6 2 0 1 5 0 0 Aor13HI TCCGGA 6 2 0 1 5 0 0 Aor51HI AGCGCT 6 2 1 3 3 0 0 ApaI GGGCCC 6 2 0 5 1 0 0 ApaBI gcannnnntgc 11 2 0 8 3 0 0 ApaLI GTGCAC 6 2 0 1 5 0 0 ApeKI GCWGC 5 2 0 1 4 0 0 ApoI RAATTY 6 2 0 1 5 0 0 AscI GGCGCGCC 8 2 0 2 6 0 0 AseI ATTAAT 6 2 0 2 4 0 0 AsiAI ACCGGT 6 2 0 1 5 0 0 AsiSI GCGATCGC 8 2 0 5 3 0 0 AspI GACNNNGTC 9 2 0 4 5 0 0 Asp700I GAANNNNTTC 10 2 1 5 5 0 0 Asp718I GGTACC 6 2 0 1 5 0 0 AspA2I CCTAGG 6 2 0 1 5 0 0 AspCNI GCCGC 5 0 0 0 0 0 0 AspEI GACNNNNNGTC 11 2 0 6 5 0 0 AspHI GWGCWC 6 2 0 5 1 0 0 AspLEI GCGC 4 2 0 3 1 0 0 AspS9I GGNCC 5 2 0 1 4 0 0 AssI AGTACT 6 2 1 3 3 0 0 AsuI ggncc 5 2 0 1 4 0 0 AsuII TTCGAA 6 2 0 2 4 0 0 AsuC2I CCSGG 5 2 0 2 3 0 0 AsuHPI GGTGA 5 2 0 13 12 0 0 AsuNHI GCTAGC 6 2 0 1 5 0 0 AvaI CYCGRG 6 2 0 1 5 0 0 AvaII GGWCC 5 2 0 1 4 0 0 AvaIII atgcat 6 0 0 0 0 0 0 AviII TGCGCA 6 2 1 3 3 0 0 AvrII CCTAGG 6 2 0 1 5 0 0 AxyI CCTNAGG 7 2 0 2 5 0 0 BaeI ACNNNNGTAYC 11 4 0 -11 -16 23 18 BalI TGGCCA 6 2 1 3 3 0 0 BamHI GGATCC 6 2 0 1 5 0 0 BanI GGYRCC 6 2 0 1 5 0 0 BanII GRGCYC 6 2 0 5 1 0 0 BanIII ATCGAT 6 2 0 2 4 0 0 BauI CACGAG 6 2 0 1 5 0 0 BbeI GGCGCC 6 2 0 5 1 0 0 Bbr7I gaagac 6 2 0 13 17 0 0 BbrPI CACGTG 6 2 1 3 3 0 0 BbsI GAAGAC 6 2 0 8 12 0 0 BbuI GCATGC 6 2 0 5 1 0 0 BbvI GCAGC 5 2 0 13 17 0 0 BbvII gaagac 6 2 0 8 12 0 0 Bbv12I GWGCWC 6 2 0 5 1 0 0 BbvCI CCTCAGC 7 2 0 2 5 0 0 BccI CCATC 5 2 0 9 10 0 0 Bce83I cttgag 6 2 0 22 20 0 0 BceAI ACGGC 5 2 0 17 19 0 0 BcefI acggc 5 2 0 17 18 0 0 BcgI CGANNNNNNTGC 12 4 0 -11 -13 24 22 BciVI GTATCC 6 2 0 12 11 0 0 BclI TGATCA 6 2 0 1 5 0 0 BcnI CCSGG 5 2 0 2 3 0 0 BcuI ACTAGT 6 2 0 1 5 0 0 BetI wccggw 6 2 0 1 5 0 0 BfaI CTAG 4 2 0 1 3 0 0 BfiI ACTGGG 6 2 0 11 10 0 0 BfmI CTRYAG 6 2 0 1 5 0 0 BfrI CTTAAG 6 2 0 1 5 0 0 BfrBI ATGCAT 6 2 1 3 3 0 0 BfuI GTATCC 6 2 0 12 11 0 0 BfuAI ACCTGC 6 2 0 10 14 0 0 BfuCI GATC 4 2 0 -1 4 0 0 BglI GCCNNNNNGGC 11 2 0 7 4 0 0 BglII AGATCT 6 2 0 1 5 0 0 BinI ggatc 5 2 0 9 10 0 0 BlfI TCCGGA 6 2 0 1 5 0 0 BlnI CCTAGG 6 2 0 1 5 0 0 BlpI GCTNAGC 7 2 0 2 5 0 0 Bme18I GGWCC 5 2 0 1 4 0 0 Bme1390I CCNGG 5 2 0 2 3 0 0 Bme1580I GKGCMC 6 2 0 5 1 0 0 BmgI gkgccc 6 0 0 0 0 0 0 BmgBI CACGTC 6 2 1 3 3 0 0 BmrI ACTGGG 6 2 0 11 10 0 0 BmtI GCTAGC 6 2 0 5 1 0 0 BmyI GDGCHC 6 2 0 5 1 0 0 BoxI GACNNNNGTC 10 2 1 5 5 0 0 BpcI CTRYAG 6 2 0 1 5 0 0 BpiI GAAGAC 6 2 0 8 12 0 0 BplI GAGNNNNNCTC 11 4 0 -9 -14 24 19 BpmI CTGGAG 6 2 0 22 20 0 0 BptI CCWGG 5 2 0 2 3 0 0 Bpu10I CCTNAGC 7 2 0 2 5 0 0 Bpu14I TTCGAA 6 2 0 2 4 0 0 Bpu1102I GCTNAGC 7 2 0 2 5 0 0 BpuAI GAAGAC 6 2 0 8 12 0 0 BpuEI CTTGAG 6 2 0 22 20 0 0 BsaI GGTCTC 6 2 0 7 11 0 0 Bsa29I ATCGAT 6 2 0 2 4 0 0 BsaAI YACGTR 6 2 1 3 3 0 0 BsaBI GATNNNNATC 10 2 1 5 5 0 0 BsaHI GRCGYC 6 2 0 2 4 0 0 BsaJI CCNNGG 6 2 0 1 5 0 0 BsaMI GAATGC 6 2 0 7 5 0 0 BsaWI WCCGGW 6 2 0 1 5 0 0 BsaXI ACNNNNNCTCC 11 4 0 -10 -13 21 18 BsbI caacac 6 0 0 0 0 0 0 Bsc4I CCNNNNNNNGG 11 2 0 7 4 0 0 BscAI gcatc 5 2 0 9 11 0 0 BscGI cccgt 5 0 0 0 0 0 0 Bse1I ACTGG 5 2 0 6 4 0 0 Bse8I GATNNNNATC 10 2 1 5 5 0 0 Bse21I CCTNAGG 7 2 0 2 5 0 0 Bse118I RCCGGY 6 2 0 1 5 0 0 BseAI TCCGGA 6 2 0 1 5 0 0 BseBI CCWGG 5 2 0 2 3 0 0 BseCI ATCGAT 6 2 0 2 4 0 0 BseDI CCNNGG 6 2 0 1 5 0 0 Bse3DI GCAATG 6 2 0 8 6 0 0 BseGI GGATG 5 2 0 7 5 0 0 BseJI GATNNNNATC 10 2 1 5 5 0 0 BseLI CCNNNNNNNGG 11 2 0 7 4 0 0 BseMI GCAATG 6 2 0 8 6 0 0 BseMII CTCAG 5 2 0 15 13 0 0 BseNI ACTGG 5 2 0 6 4 0 0 BsePI GCGCGC 6 2 0 1 5 0 0 BseRI GAGGAG 6 2 0 16 14 0 0 BseSI GKGCMC 6 2 0 5 1 0 0 BseXI GCAGC 5 2 0 13 17 0 0 BseX3I CGGCCG 6 2 0 1 5 0 0 BseYI CCCAGC 6 2 0 1 5 0 0 BsgI GTGCAG 6 2 0 22 20 0 0 Bsh1236I CGCG 4 2 1 2 2 0 0 Bsh1285I CGRYCG 6 2 0 4 2 0 0 BshFI GGCC 4 2 1 2 2 0 0 BshNI GGYRCC 6 2 0 1 5 0 0 BshTI ACCGGT 6 2 0 1 5 0 0 BsiI cacgag 6 2 0 1 5 0 0 BsiEI CGRYCG 6 2 0 4 2 0 0 BsiHKAI GWGCWC 6 2 0 5 1 0 0 BsiHKCI CYCGRG 6 2 0 1 5 0 0 BsiSI CCGG 4 2 0 1 3 0 0 BsiWI CGTACG 6 2 0 1 5 0 0 BsiYI CCNNNNNNNGG 11 2 0 7 4 0 0 BslI CCNNNNNNNGG 11 2 0 7 4 0 0 BslFI GGGAC 5 4 0 15 19 15 19 BsmI GAATGC 6 2 0 7 5 0 0 BsmAI GTCTC 5 2 0 6 10 0 0 BsmBI CGTCTC 6 2 0 7 11 0 0 BsmFI GGGAC 5 2 0 15 19 0 0 Bso31I GGTCTC 6 2 0 7 11 0 0 BsoBI CYCGRG 6 2 0 1 5 0 0 BsoMAI GTCTC 5 2 0 6 10 0 0 Bsp13I TCCGGA 6 2 0 1 5 0 0 Bsp19I CCATGG 6 2 0 1 5 0 0 Bsp24I gacnnnnnntgg 12 4 0 -9 -14 24 19 Bsp68I TCGCGA 6 2 1 3 3 0 0 Bsp106I ATCGAT 6 2 0 2 4 0 0 Bsp119I TTCGAA 6 2 0 2 4 0 0 Bsp120I GGGCCC 6 2 0 1 5 0 0 Bsp143I GATC 4 2 0 -1 4 0 0 Bsp143II RGCGCY 6 2 0 5 1 0 0 Bsp1286I GDGCHC 6 2 0 5 1 0 0 Bsp1407I TGTACA 6 2 0 1 5 0 0 Bsp1720I GCTNAGC 7 2 0 2 5 0 0 BspANI GGCC 4 2 1 2 2 0 0 BspCI CGATCG 6 2 0 4 2 0 0 BspCNI CTCAG 5 2 0 14 12 0 0 BspDI ATCGAT 6 2 0 2 4 0 0 BspEI TCCGGA 6 2 0 1 5 0 0 BspGI ctggac 6 0 0 0 0 0 0 BspHI TCATGA 6 2 0 1 5 0 0 BspLI GGNNCC 6 2 1 3 3 0 0 BspLU11I ACATGT 6 2 0 1 5 0 0 BspMI ACCTGC 6 2 0 10 14 0 0 BspMII tccgga 6 2 0 1 5 0 0 BspMAI CTGCAG 6 2 0 5 1 0 0 BspNCI ccaga 5 0 0 0 0 0 0 BspPI GGATC 5 2 0 9 10 0 0 BspTI CTTAAG 6 2 0 1 5 0 0 BspT104I TTCGAA 6 2 0 2 4 0 0 BspT107I GGYRCC 6 2 0 1 5 0 0 BspTNI GGTCTC 6 2 0 7 11 0 0 BspXI ATCGAT 6 2 0 2 4 0 0 BsrI ACTGG 5 2 0 6 4 0 0 BsrBI CCGCTC 6 2 1 3 3 0 0 BsrDI GCAATG 6 2 0 8 6 0 0 BsrFI RCCGGY 6 2 0 1 5 0 0 BsrGI TGTACA 6 2 0 1 5 0 0 BsrSI ACTGG 5 2 0 6 4 0 0 BssAI RCCGGY 6 2 0 1 5 0 0 BssECI CCNNGG 6 2 0 1 5 0 0 BssHI CTCGAG 6 2 0 1 5 0 0 BssHII GCGCGC 6 2 0 1 5 0 0 BssKI CCNGG 5 2 0 -1 5 0 0 BssNAI GTATAC 6 2 1 3 3 0 0 BssSI CACGAG 6 2 0 1 5 0 0 BssT1I CCWWGG 6 2 0 1 5 0 0 Bst6I CTCTTC 6 2 0 7 10 0 0 Bst98I CTTAAG 6 2 0 1 5 0 0 Bst1107I GTATAC 6 2 1 3 3 0 0 BstACI GRCGYC 6 2 0 2 4 0 0 BstAPI GCANNNNNTGC 11 2 0 7 4 0 0 BstAUI TGTACA 6 2 0 1 5 0 0 BstBI TTCGAA 6 2 0 2 4 0 0 Bst2BI CACGAG 6 2 0 1 5 0 0 BstBAI YACGTR 6 2 1 3 3 0 0 Bst4CI ACNGT 5 2 0 3 2 0 0 BstC8I GCNNGC 6 2 1 3 3 0 0 BstDEI CTNAG 5 2 0 1 4 0 0 BstDSI CCRYGG 6 2 0 1 5 0 0 BstEII GGTNACC 7 2 0 1 6 0 0 BstENI CCTNNNNNAGG 11 2 0 5 6 0 0 BstF5I GGATG 5 2 0 7 5 0 0 BstFNI CGCG 4 2 1 2 2 0 0 BstH2I RGCGCY 6 2 0 5 1 0 0 BstHHI GCGC 4 2 0 3 1 0 0 BstKTI GATC 4 2 0 3 1 0 0 BstMBI GATC 4 2 0 -1 4 0 0 BstMCI CGRYCG 6 2 0 4 2 0 0 BstMWI GCNNNNNNNGC 11 2 0 7 4 0 0 BstNI CCWGG 5 2 0 2 3 0 0 BstNSI RCATGY 6 2 0 5 1 0 0 BstOI CCWGG 5 2 0 2 3 0 0 BstPI GGTNACC 7 2 0 1 6 0 0 BstPAI GACNNNNGTC 10 2 1 5 5 0 0 BstSCI CCNGG 5 2 0 -1 5 0 0 BstSFI CTRYAG 6 2 0 1 5 0 0 BstSNI TACGTA 6 2 1 3 3 0 0 BstUI CGCG 4 2 1 2 2 0 0 Bst2UI CCWGG 5 2 0 2 3 0 0 BstV1I GCAGC 5 2 0 13 17 0 0 BstV2I GAAGAC 6 2 0 8 12 0 0 BstXI CCANNNNNNTGG 12 2 0 8 4 0 0 BstX2I RGATCY 6 2 0 1 5 0 0 BstYI RGATCY 6 2 0 1 5 0 0 BstZI CGGCCG 6 2 0 1 5 0 0 BstZ17I GTATAC 6 2 1 3 3 0 0 Bsu15I ATCGAT 6 2 0 2 4 0 0 Bsu36I CCTNAGG 7 2 0 2 5 0 0 BsuRI GGCC 4 2 1 2 2 0 0 BsuTUI ATCGAT 6 2 0 2 4 0 0 BtgI CCRYGG 6 2 0 1 5 0 0 BtgZI GCGATG 6 2 0 16 20 0 0 BthCI gcngc 5 2 0 4 1 0 0 BtrI CACGTC 6 2 1 3 3 0 0 BtsI GCAGTG 6 2 0 8 6 0 0 BveI ACCTGC 6 2 0 10 14 0 0 Cac8I GCNNGC 6 2 1 3 3 0 0 CaiI CAGNNNCTG 9 2 0 6 3 0 0 CauII ccsgg 5 2 0 2 3 0 0 CciNI GCGGCCGC 8 2 0 2 6 0 0 CdiI catcg 5 2 1 4 4 0 0 CelII GCTNAGC 7 2 0 2 5 0 0 CfoI GCGC 4 2 0 3 1 0 0 CfrI YGGCCR 6 2 0 1 5 0 0 Cfr9I CCCGGG 6 2 0 1 5 0 0 Cfr10I RCCGGY 6 2 0 1 5 0 0 Cfr13I GGNCC 5 2 0 1 4 0 0 Cfr42I CCGCGG 6 2 0 4 2 0 0 ChaI gatc 4 2 0 4 -1 0 0 CjeI ccannnnnngt 11 4 0 -9 -15 26 20 CjeNII gagnnnnngt 10 0 0 0 0 0 0 CjePI ccannnnnnntc 12 4 0 -8 -14 26 20 ClaI ATCGAT 6 2 0 2 4 0 0 CpoI CGGWCCG 7 2 0 2 5 0 0 CspI CGGWCCG 7 2 0 2 5 0 0 Csp6I GTAC 4 2 0 1 3 0 0 Csp45I TTCGAA 6 2 0 2 4 0 0 CspAI ACCGGT 6 2 0 1 5 0 0 CspCI CAANNNNNGTGG 12 4 0 -12 -14 24 22 CstMI aaggag 6 2 0 26 24 0 0 CviAII CATG 4 2 0 1 3 0 0 CviJI RGCY 4 2 1 2 2 0 0 CviRI tgca 4 2 1 2 2 0 0 DdeI CTNAG 5 2 0 1 4 0 0 DpnI GATC 4 2 1 2 2 0 0 DpnII GATC 4 2 0 -1 4 0 0 DraI TTTAAA 6 2 1 3 3 0 0 DraII RGGNCCY 7 2 0 2 5 0 0 DraIII CACNNNGTG 9 2 0 6 3 0 0 DrdI GACNNNNNNGTC 12 2 0 7 5 0 0 DrdII gaacca 6 0 0 0 0 0 0 DriI GACNNNNNGTC 11 2 0 6 5 0 0 DsaI ccrygg 6 2 0 1 5 0 0 DseDI GACNNNNNNGTC 12 2 0 7 5 0 0 EaeI YGGCCR 6 2 0 1 5 0 0 EagI CGGCCG 6 2 0 1 5 0 0 Eam1104I CTCTTC 6 2 0 7 10 0 0 Eam1105I GACNNNNNGTC 11 2 0 6 5 0 0 EarI CTCTTC 6 2 0 7 10 0 0 EciI GGCGGA 6 2 0 17 15 0 0 Ecl136II GAGCTC 6 2 1 3 3 0 0 EclHKI GACNNNNNGTC 11 2 0 6 5 0 0 EclXI CGGCCG 6 2 0 1 5 0 0 Eco24I GRGCYC 6 2 0 5 1 0 0 Eco31I GGTCTC 6 2 0 7 11 0 0 Eco32I GATATC 6 2 1 3 3 0 0 Eco47I GGWCC 5 2 0 1 4 0 0 Eco47III AGCGCT 6 2 1 3 3 0 0 Eco52I CGGCCG 6 2 0 1 5 0 0 Eco57I CTGAAG 6 2 0 22 20 0 0 Eco72I CACGTG 6 2 1 3 3 0 0 Eco81I CCTNAGG 7 2 0 2 5 0 0 Eco88I CYCGRG 6 2 0 1 5 0 0 Eco91I GGTNACC 7 2 0 1 6 0 0 Eco105I TACGTA 6 2 1 3 3 0 0 Eco130I CCWWGG 6 2 0 1 5 0 0 Eco147I AGGCCT 6 2 1 3 3 0 0 EcoHI ccsgg 5 2 0 -1 5 0 0 EcoICRI GAGCTC 6 2 1 3 3 0 0 Eco57MI CTGRAG 6 2 0 22 20 0 0 EcoNI CCTNNNNNAGG 11 2 0 5 6 0 0 EcoO65I GGTNACC 7 2 0 1 6 0 0 EcoO109I RGGNCCY 7 2 0 2 5 0 0 EcoRI GAATTC 6 2 0 1 5 0 0 EcoRII CCWGG 5 2 0 -1 5 0 0 EcoRV GATATC 6 2 1 3 3 0 0 EcoT14I CCWWGG 6 2 0 1 5 0 0 EcoT22I ATGCAT 6 2 0 5 1 0 0 EcoT38I GRGCYC 6 2 0 5 1 0 0 EgeI GGCGCC 6 2 1 3 3 0 0 EheI GGCGCC 6 2 1 3 3 0 0 ErhI CCWWGG 6 2 0 1 5 0 0 EsaBC3I tcga 4 2 1 2 2 0 0 EspI gctnagc 7 2 0 2 5 0 0 Esp3I CGTCTC 6 2 0 7 11 0 0 FalI AAGNNNNNCTT 11 4 0 -9 -14 24 19 FaqI GGGAC 5 2 0 15 19 0 0 FatI CATG 4 2 0 -1 4 0 0 FauI CCCGC 5 2 0 9 11 0 0 FauNDI CATATG 6 2 0 2 4 0 0 FbaI TGATCA 6 2 0 1 5 0 0 FblI GTMKAC 6 2 0 2 4 0 0 FinI gggac 5 0 0 0 0 0 0 FmuI ggncc 5 2 0 4 1 0 0 FnuDII cgcg 4 2 1 2 2 0 0 Fnu4HI GCNGC 5 2 0 2 3 0 0 FokI GGATG 5 2 0 14 18 0 0 FriOI GRGCYC 6 2 0 5 1 0 0 FseI GGCCGGCC 8 2 0 6 2 0 0 FspI TGCGCA 6 2 1 3 3 0 0 FspAI RTGCGCAY 8 2 1 4 4 0 0 FspBI CTAG 4 2 0 1 3 0 0 Fsp4HI GCNGC 5 2 0 2 3 0 0 FunI AGCGCT 6 2 1 3 3 0 0 FunII GAATTC 6 2 0 1 5 0 0 GdiII cggccr 6 2 0 1 5 0 0 GsuI CTGGAG 6 2 0 22 20 0 0 HaeI wggccw 6 2 1 3 3 0 0 HaeII RGCGCY 6 2 0 5 1 0 0 HaeIII GGCC 4 2 1 2 2 0 0 HaeIV gaynnnnnrtc 11 4 0 -8 -14 25 20 HapII CCGG 4 2 0 1 3 0 0 HgaI GACGC 5 2 0 10 15 0 0 HgiAI gwgcwc 6 2 0 5 1 0 0 HgiCI ggyrcc 6 2 0 1 5 0 0 HgiEII accnnnnnnggt 12 0 0 0 0 0 0 HgiJII grgcyc 6 2 0 5 1 0 0 HhaI GCGC 4 2 0 3 1 0 0 Hin1I GRCGYC 6 2 0 2 4 0 0 Hin1II CATG 4 2 0 4 -1 0 0 Hin4I GAYNNNNNVTC 11 4 0 -9 -14 24 19 Hin4II ccttc 5 0 0 0 0 0 0 Hin6I GCGC 4 2 0 1 3 0 0 HinP1I GCGC 4 2 0 1 3 0 0 HincII GTYRAC 6 2 1 3 3 0 0 HindII GTYRAC 6 2 1 3 3 0 0 HindIII AAGCTT 6 2 0 1 5 0 0 HinfI GANTC 5 2 0 1 4 0 0 HpaI GTTAAC 6 2 1 3 3 0 0 HpaII CCGG 4 2 0 1 3 0 0 HphI GGTGA 5 2 0 13 12 0 0 Hpy8I GTNNAC 6 2 1 3 3 0 0 Hpy99I CGWCG 5 2 0 5 -1 0 0 Hpy178III tcnnga 6 2 0 2 4 0 0 Hpy188I TCNGA 5 2 0 3 2 0 0 Hpy188III TCNNGA 6 2 0 2 4 0 0 HpyAV ccttc 5 2 0 11 10 0 0 HpyCH4III ACNGT 5 2 0 3 2 0 0 HpyCH4IV ACGT 4 2 0 1 3 0 0 HpyCH4V TGCA 4 2 1 2 2 0 0 HpyF10VI GCNNNNNNNGC 11 2 0 7 4 0 0 Hsp92I GRCGYC 6 2 0 2 4 0 0 Hsp92II CATG 4 2 0 4 -1 0 0 HspAI GCGC 4 2 0 1 3 0 0 ItaI GCNGC 5 2 0 2 3 0 0 KasI GGCGCC 6 2 0 1 5 0 0 KpnI GGTACC 6 2 0 5 1 0 0 Kpn2I TCCGGA 6 2 0 1 5 0 0 KspI CCGCGG 6 2 0 4 2 0 0 Ksp22I TGATCA 6 2 0 1 5 0 0 Ksp632I CTCTTC 6 2 0 7 10 0 0 KspAI GTTAAC 6 2 1 3 3 0 0 Kzo9I GATC 4 2 0 -1 4 0 0 LpnI rgcgcy 6 2 1 3 3 0 0 LweI GCATC 5 2 0 10 14 0 0 MabI ACCWGGT 7 2 0 1 6 0 0 MaeI CTAG 4 2 0 1 3 0 0 MaeII ACGT 4 2 0 1 3 0 0 MaeIII GTNAC 5 2 0 -1 5 0 0 MamI GATNNNNATC 10 2 1 5 5 0 0 MbiI CCGCTC 6 2 1 3 3 0 0 MboI GATC 4 2 0 -1 4 0 0 MboII GAAGA 5 2 0 13 12 0 0 McrI cgrycg 6 2 0 4 2 0 0 MfeI CAATTG 6 2 0 1 5 0 0 MflI RGATCY 6 2 0 1 5 0 0 MhlI GDGCHC 6 2 0 5 1 0 0 MjaIV gtnnac 6 0 0 0 0 0 0 MlsI TGGCCA 6 2 1 3 3 0 0 MluI ACGCGT 6 2 0 1 5 0 0 MluNI TGGCCA 6 2 1 3 3 0 0 MlyI GAGTC 5 2 1 10 10 0 0 Mly113I GGCGCC 6 2 0 2 4 0 0 MmeI TCCRAC 6 2 0 26 24 0 0 MnlI CCTC 4 2 0 11 10 0 0 Mph1103I ATGCAT 6 2 0 5 1 0 0 MroI TCCGGA 6 2 0 1 5 0 0 MroNI GCCGGC 6 2 0 1 5 0 0 MroXI GAANNNNTTC 10 2 1 5 5 0 0 MscI TGGCCA 6 2 1 3 3 0 0 MseI TTAA 4 2 0 1 3 0 0 MslI CAYNNNNRTG 10 2 1 5 5 0 0 MspI CCGG 4 2 0 1 3 0 0 Msp20I TGGCCA 6 2 1 3 3 0 0 MspA1I CMGCKG 6 2 1 3 3 0 0 MspCI CTTAAG 6 2 0 1 5 0 0 MspR9I CCNGG 5 2 0 2 3 0 0 MssI GTTTAAAC 8 2 1 4 4 0 0 MstI tgcgca 6 2 1 3 3 0 0 MunI CAATTG 6 2 0 1 5 0 0 MvaI CCWGG 5 2 0 2 3 0 0 Mva1269I GAATGC 6 2 0 7 5 0 0 MvnI CGCG 4 2 1 2 2 0 0 MvrI CGATCG 6 2 0 4 2 0 0 MwoI GCNNNNNNNGC 11 2 0 7 4 0 0 NaeI GCCGGC 6 2 1 3 3 0 0 NarI GGCGCC 6 2 0 2 4 0 0 NciI CCSGG 5 2 0 2 3 0 0 NcoI CCATGG 6 2 0 1 5 0 0 NdeI CATATG 6 2 0 2 4 0 0 NdeII GATC 4 2 0 -1 4 0 0 NgoMIV GCCGGC 6 2 0 1 5 0 0 NheI GCTAGC 6 2 0 1 5 0 0 NlaIII CATG 4 2 0 4 -1 0 0 NlaIV GGNNCC 6 2 1 3 3 0 0 Nli3877I cycgrg 6 2 0 5 1 0 0 NmuCI GTSAC 5 2 0 -1 5 0 0 NotI GCGGCCGC 8 2 0 2 6 0 0 NruI TCGCGA 6 2 1 3 3 0 0 NsbI TGCGCA 6 2 1 3 3 0 0 NsiI ATGCAT 6 2 0 5 1 0 0 NspI RCATGY 6 2 0 5 1 0 0 NspIII CYCGRG 6 2 0 1 5 0 0 NspV TTCGAA 6 2 0 2 4 0 0 NspBII cmgckg 6 2 1 3 3 0 0 OliI CACNNNNGTG 10 2 1 5 5 0 0 PacI TTAATTAA 8 2 0 5 3 0 0 PaeI GCATGC 6 2 0 5 1 0 0 PaeR7I CTCGAG 6 2 0 1 5 0 0 PagI TCATGA 6 2 0 1 5 0 0 PalI GGCC 4 2 1 2 2 0 0 PasI CCCWGGG 7 2 0 2 5 0 0 PauI GCGCGC 6 2 0 1 5 0 0 PceI AGGCCT 6 2 1 3 3 0 0 PciI ACATGT 6 2 0 1 5 0 0 PctI GAATGC 6 2 0 7 5 0 0 PdiI GCCGGC 6 2 1 3 3 0 0 PdmI GAANNNNTTC 10 2 1 5 5 0 0 PfeI GAWTC 5 2 0 1 4 0 0 Pfl23II CGTACG 6 2 0 1 5 0 0 Pfl1108I tcgtag 6 0 0 0 0 0 0 PflBI CCANNNNNTGG 11 2 0 7 4 0 0 PflFI GACNNNGTC 9 2 0 4 5 0 0 PflMI CCANNNNNTGG 11 2 0 7 4 0 0 PfoI TCCNGGA 7 2 0 1 6 0 0 PhoI GGCC 4 2 1 2 2 0 0 PinAI ACCGGT 6 2 0 1 5 0 0 PleI GAGTC 5 2 0 9 10 0 0 Ple19I CGATCG 6 2 0 4 2 0 0 PmaCI CACGTG 6 2 1 3 3 0 0 PmeI GTTTAAAC 8 2 1 4 4 0 0 PmlI CACGTG 6 2 1 3 3 0 0 PpiI GAACNNNNNCTC 12 4 0 -8 -13 25 20 PpsI GAGTC 5 2 0 9 10 0 0 Ppu10I atgcat 6 2 0 1 5 0 0 PpuMI RGGWCCY 7 2 0 2 5 0 0 PpuXI RGGWCCY 7 2 0 2 5 0 0 PshAI GACNNNNGTC 10 2 1 5 5 0 0 PshBI ATTAAT 6 2 0 2 4 0 0 PsiI TTATAA 6 2 1 3 3 0 0 Psp03I ggwcc 5 2 0 4 1 0 0 Psp5II RGGWCCY 7 2 0 2 5 0 0 Psp6I CCWGG 5 2 0 -1 5 0 0 Psp1406I AACGTT 6 2 0 2 4 0 0 PspAI CCCGGG 6 2 0 1 5 0 0 Psp124BI GAGCTC 6 2 0 5 1 0 0 PspCI CACGTG 6 2 1 3 3 0 0 PspEI GGTNACC 7 2 0 1 6 0 0 PspGI CCWGG 5 2 0 -1 5 0 0 PspLI CGTACG 6 2 0 1 5 0 0 PspN4I GGNNCC 6 2 1 3 3 0 0 PspOMI GGGCCC 6 2 0 1 5 0 0 PspPI GGNCC 5 2 0 1 4 0 0 PspPPI RGGWCCY 7 2 0 2 5 0 0 PspXI VCTCGAGB 8 2 0 2 6 0 0 PsrI GAACNNNNNNTAC 13 4 0 -8 -13 25 20 PssI rggnccy 7 2 0 5 2 0 0 PstI CTGCAG 6 2 0 5 1 0 0 PsuI RGATCY 6 2 0 1 5 0 0 PsyI GACNNNGTC 9 2 0 4 5 0 0 PvuI CGATCG 6 2 0 4 2 0 0 PvuII CAGCTG 6 2 1 3 3 0 0 RcaI TCATGA 6 2 0 1 5 0 0 RleAI cccaca 6 2 0 18 15 0 0 RsaI GTAC 4 2 1 2 2 0 0 RsrII CGGWCCG 7 2 0 2 5 0 0 Rsr2I CGGWCCG 7 2 0 2 5 0 0 SacI GAGCTC 6 2 0 5 1 0 0 SacII CCGCGG 6 2 0 4 2 0 0 SalI GTCGAC 6 2 0 1 5 0 0 SanDI GGGWCCC 7 2 0 2 5 0 0 SapI GCTCTTC 7 2 0 8 11 0 0 SatI GCNGC 5 2 0 2 3 0 0 SauI cctnagg 7 2 0 2 5 0 0 Sau96I GGNCC 5 2 0 1 4 0 0 Sau3AI GATC 4 2 0 -1 4 0 0 SbfI CCTGCAGG 8 2 0 6 2 0 0 ScaI AGTACT 6 2 1 3 3 0 0 SchI GAGTC 5 2 1 10 10 0 0 SciI ctcgag 6 2 1 3 3 0 0 ScrFI CCNGG 5 2 0 2 3 0 0 SdaI CCTGCAGG 8 2 0 6 2 0 0 SduI GDGCHC 6 2 0 5 1 0 0 SecI ccnngg 6 2 0 1 5 0 0 SelI cgcg 4 2 0 -1 4 0 0 SexAI ACCWGGT 7 2 0 1 6 0 0 SfaNI GCATC 5 2 0 10 14 0 0 SfcI CTRYAG 6 2 0 1 5 0 0 SfeI ctryag 6 2 0 1 5 0 0 SfiI GGCCNNNNNGGCC 13 2 0 8 5 0 0 SfoI GGCGCC 6 2 1 3 3 0 0 Sfr274I CTCGAG 6 2 0 1 5 0 0 Sfr303I CCGCGG 6 2 0 4 2 0 0 SfuI TTCGAA 6 2 0 2 4 0 0 SgfI GCGATCGC 8 2 0 5 3 0 0 SgrAI CRCCGGYG 8 2 0 2 6 0 0 SgrBI CCGCGG 6 2 0 4 2 0 0 SimI gggtc 5 2 0 2 5 0 0 SinI GGWCC 5 2 0 1 4 0 0 SlaI CTCGAG 6 2 0 1 5 0 0 SmaI CCCGGG 6 2 1 3 3 0 0 SmiI ATTTAAAT 8 2 1 4 4 0 0 SmiMI CAYNNNNRTG 10 2 1 5 5 0 0 SmlI CTYRAG 6 2 0 1 5 0 0 SmuI CCCGC 5 2 0 9 11 0 0 SnaI gtatac 6 0 0 0 0 0 0 SnaBI TACGTA 6 2 1 3 3 0 0 SpaHI GCATGC 6 2 0 5 1 0 0 SpeI ACTAGT 6 2 0 1 5 0 0 SphI GCATGC 6 2 0 5 1 0 0 SplI cgtacg 6 2 0 1 5 0 0 SrfI GCCCGGGC 8 2 1 4 4 0 0 Sse9I AATT 4 2 0 -1 4 0 0 Sse232I cgccggcg 8 2 0 2 6 0 0 Sse8387I CCTGCAGG 8 2 0 6 2 0 0 Sse8647I aggwcct 7 2 0 2 5 0 0 SseBI AGGCCT 6 2 1 3 3 0 0 SsiI CCGC 4 2 0 1 3 0 0 SspI AATATT 6 2 1 3 3 0 0 SspBI TGTACA 6 2 0 1 5 0 0 SspD5I ggtga 5 2 1 13 13 0 0 SstI GAGCTC 6 2 0 5 1 0 0 Sth132I cccg 4 2 0 8 12 0 0 StrI CTCGAG 6 2 0 1 5 0 0 StsI ggatg 5 2 0 15 19 0 0 StuI AGGCCT 6 2 1 3 3 0 0 StyI CCWWGG 6 2 0 1 5 0 0 StyD4I CCNGG 5 2 0 -1 5 0 0 SunI CGTACG 6 2 0 1 5 0 0 SwaI ATTTAAAT 8 2 1 4 4 0 0 TaaI ACNGT 5 2 0 3 2 0 0 TaiI ACGT 4 2 0 4 -1 0 0 TaqI TCGA 4 2 0 1 3 0 0 TaqII GACCGA 6 2 0 17 15 0 0 TaqII CACCCA 6 2 0 17 15 0 0 TasI AATT 4 2 0 -1 4 0 0 TatI WGTACW 6 2 0 1 5 0 0 TauI GCSGC 5 2 0 4 1 0 0 TelI GACNNNGTC 9 2 0 4 5 0 0 TfiI GAWTC 5 2 0 1 4 0 0 TliI CTCGAG 6 2 0 1 5 0 0 Tru1I TTAA 4 2 0 1 3 0 0 Tru9I TTAA 4 2 0 1 3 0 0 TscI ACGT 4 2 0 4 -1 0 0 TseI GCWGC 5 2 0 1 4 0 0 TsoI tarcca 6 0 0 0 0 0 0 Tsp45I GTSAC 5 2 0 -1 5 0 0 Tsp509I AATT 4 2 0 -1 4 0 0 Tsp4CI acngt 5 2 0 3 2 0 0 TspDTI ATGAA 5 2 0 16 14 0 0 TspEI AATT 4 2 0 -1 4 0 0 TspGWI ACGGA 5 2 0 16 14 0 0 TspRI CASTG 5 2 0 7 -3 0 0 Tth111I GACNNNGTC 9 2 0 4 5 0 0 Tth111II caarca 6 2 0 17 15 0 0 UbaF2I gaaaynnnnnrtg 13 0 0 0 0 0 0 UbaF3I cacnnnnnntcc 12 0 0 0 0 0 0 UbaF4I gaannnnnnnttgg 14 0 0 0 0 0 0 UbaF5I ctgatg 6 0 0 0 0 0 0 UbaF6I gcgac 5 0 0 0 0 0 0 UbaF7I cgtcgacg 8 0 0 0 0 0 0 UbaF8I gagnnnctc 9 0 0 0 0 0 0 UbaPI cgaacg 6 0 0 0 0 0 0 UbaTI tgannnnnntca 12 0 0 0 0 0 0 UnbI ggncc 5 2 0 -1 5 0 0 UthSI cccggg 6 2 0 2 4 0 0 Van91I CCANNNNNTGG 11 2 0 7 4 0 0 Vha464I CTTAAG 6 2 0 1 5 0 0 VneI GTGCAC 6 2 0 1 5 0 0 VpaK11AI ggwcc 5 2 0 -1 5 0 0 VpaK11BI GGWCC 5 2 0 1 4 0 0 VspI ATTAAT 6 2 0 2 4 0 0 XagI CCTNNNNNAGG 11 2 0 5 6 0 0 XapI RAATTY 6 2 0 1 5 0 0 XbaI TCTAGA 6 2 0 1 5 0 0 XceI RCATGY 6 2 0 5 1 0 0 XcmI CCANNNNNNNNNTGG 15 2 0 8 7 0 0 XhoI CTCGAG 6 2 0 1 5 0 0 XhoII RGATCY 6 2 0 1 5 0 0 XmaI CCCGGG 6 2 0 1 5 0 0 XmaIII cggccg 6 2 0 1 5 0 0 XmaCI CCCGGG 6 2 0 1 5 0 0 XmaJI CCTAGG 6 2 0 1 5 0 0 XmiI GTMKAC 6 2 0 2 4 0 0 XmnI GAANNNNTTC 10 2 1 5 5 0 0 XspI CTAG 4 2 0 1 3 0 0 ZhoI ATCGAT 6 2 0 2 4 0 0 ZraI GACGTC 6 2 1 3 3 0 0 ZrmI AGTACT 6 2 1 3 3 0 0 Zsp2I ATGCAT 6 2 0 5 1 0 0