Notes
Outline
Data Management Office and NEP
Presented at the U.S. GLOBEC Northeast Pacific Scientific Investigator Meeting
Robert C. Groman
 10-12 January 2006
Background
U.S. GLOBEC Program Office and Data Management Office for Georges Bank
DMO supports NEP and SO Projects
NEP responsibilities shared with H. Batchelder
Follow the data          button
JGOFS/GLOBEC Data Management System
Support for investigators at geographically different sites
Client support for most (all?) computing platforms (PC, Macintosh, Unix, Linux) – Web based, using standard browsers
Distributed data servers
Data contributor directly controls data
Always up to date
Easier to grow computing resources
But,  can also use a central facility if one wishes
Data Policy Characteristics
Dissemination to scientific investigators on a timely basis
Data served when "useful"
Available to others outside the Program
Data use must follow data acknowledgement policy
Handle data, model output and images
Relationship to OPeNDAP (DODS) and value added web sites
Data Objects and Methods
What’s a data object?
What are methods?
Default method (defgb)
Restructuring (rs)
Combining with Perl scripts
Slide 6
Slide 7
Data may reside on remote servers
Information About Your Data
Metadata is crucial for others to be able to use other investigator’s data.
This information comes from the contributing investigator(s).
To see the metadata, click on the text in the last column of the directory or on the “Documentation” button.
What is Interoperability?
Implementing Data Interoperability
Consistent field names
You may get a call from George H.
Global Change Master Directory (GCMD)  and Directory Interchange Format (DIF) record (for data discovery)
Enhancing JGOFS/GLOBEC software to use XML-based “info” file
Data can be viewed – level 0
Next level: 1
Next level: 2
Or plotted
Selecting X-Y plotting options
Simple Plot
Or downloaded
Download Utility
Data Projection
Selecting just the field names you want
Try an on-line example
Data Selection
Selecting out data with certain values
temp < 4 and depth > 120
taxon contains calanus
Try an on-line example
Other download options
Northeast Pacific/CGOA
[As of 6 Jan 2006]
Northeast Pacific/CCS
[As of 6 Jan 2006]
What is missing?
Data Management Advisory Group
Set up by DMO several years ago.
DMAG advises DMO on issues such as field names and
units.
Membership: D. Allison, H. Batchelder, J. Bisagni,
C. Flagg, K. Garrison, R. Goldsmith, B. Groman,
G. Heimerdinger, E. Hofmann, S. Howard, J. Manning,
W. Sass, P. Smith
Software Tools
GeoZui3D
EZGZ interface between JGOFS/GLOBEC and GeoZui3D
EasyKrig (download)
Digitizer application
Data Visualization Enhancements
Better Able to Handle:
Acoustic backscatter data (curtain plots)
Arbitrarily spaced scalar & vector data
Axes, labels, grids, bounding boxes
Underlying bathymetry surfaces
Multiple color maps for each object
Point-and-click object identification
3D thumbnails and list boxes for easier selection and previewing of variables
Software Design Criteria
Slide 30
Bathymetry off Cape Cod
Script file to load layers/colors/data points
Mark Benfield Stellwagon Bank abundance 3D gridded scalar field via kriging
Zoomed in
Same view but with only higher density (counts) shown
Rotated view with different lighting
Curtain without points
Curtain without points, rotated
Isosurfaces
Isosurfaces zoomed in
Isosurfaces zoomed in but higher counts only
Slide 42
Following GeoZui3D slides not used during presentation
Curtain with points
Curtain slicer
Curtain slicer rotated
All slices
Display reference grid
Example of gradient vectors
Visualization Tools
GeoZui3D & EZGZ
Slide 52